Variant report

Variant	rs73728688
Chromosome Location	chr7:137038926-137038927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10238974	1.00[EUR][1000 genomes]
rs11983998	1.00[EUR][1000 genomes]
rs1534460	1.00[EUR][1000 genomes]
rs320717	1.00[AMR][1000 genomes]
rs3898947	1.00[EUR][1000 genomes]
rs56701854	1.00[EUR][1000 genomes]
rs56820348	1.00[AMR][1000 genomes]
rs58274406	1.00[EUR][1000 genomes]
rs61018676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61531655	1.00[AMR][1000 genomes]
rs6959323	1.00[EUR][1000 genomes]
rs6961173	1.00[EUR][1000 genomes]
rs6971858	1.00[EUR][1000 genomes]
rs73450894	1.00[EUR][1000 genomes]
rs73452984	1.00[EUR][1000 genomes]
rs73452985	1.00[EUR][1000 genomes]
rs73452996	1.00[EUR][1000 genomes]
rs73455103	1.00[EUR][1000 genomes]
rs73455105	1.00[EUR][1000 genomes]
rs73728685	1.00[AMR][1000 genomes]
rs73728687	1.00[AMR][1000 genomes]
rs73728690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73728699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730319	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73730606	1.00[AMR][1000 genomes]
rs73730607	1.00[AMR][1000 genomes]
rs73730628	1.00[EUR][1000 genomes]
rs7800546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv889242	chr7:137005808-137081223	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137036200-137040200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:137037000-137039200	Enhancers	Brain Substantia Nigra	brain
3	chr7:137037200-137039400	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:137037200-137040400	Enhancers	Brain Germinal Matrix	brain
5	chr7:137037600-137039000	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:137037600-137040200	Enhancers	Fetal Lung	lung
7	chr7:137037800-137045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:137038000-137039000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:137038400-137039200	Enhancers	Brain Anterior Caudate	brain
10	chr7:137038600-137039000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:137038600-137039000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:137038600-137039200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr7:137038600-137039200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:137038600-137039400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:137038600-137039400	Enhancers	Stomach Smooth Muscle	stomach
16	chr7:137038600-137039600	Active TSS	Brain Angular Gyrus	brain
17	chr7:137038600-137039800	Enhancers	Fetal Heart	heart
18	chr7:137038600-137040000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr7:137038600-137040000	Enhancers	Fetal Stomach	stomach
20	chr7:137038800-137039000	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:137038800-137039000	Flanking Active TSS	Fetal Brain Male	brain

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