Variant report
| Variant | rs73450894 |
|---|---|
| Chromosome Location | chr7:136891967-136891968 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:136889214..136890885-chr7:136891240..136892885,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10232291 | 1.00[EUR][1000 genomes] |
| rs10235284 | 1.00[EUR][1000 genomes] |
| rs10238974 | 1.00[EUR][1000 genomes] |
| rs10243522 | 1.00[EUR][1000 genomes] |
| rs11983998 | 1.00[EUR][1000 genomes] |
| rs17168893 | 1.00[EUR][1000 genomes] |
| rs17168894 | 1.00[EUR][1000 genomes] |
| rs3898947 | 1.00[EUR][1000 genomes] |
| rs56701854 | 1.00[EUR][1000 genomes] |
| rs61018676 | 1.00[EUR][1000 genomes] |
| rs67323673 | 0.83[AFR][1000 genomes] |
| rs6959323 | 1.00[EUR][1000 genomes] |
| rs6961173 | 1.00[EUR][1000 genomes] |
| rs6971858 | 1.00[EUR][1000 genomes] |
| rs73452984 | 1.00[EUR][1000 genomes] |
| rs73452985 | 1.00[EUR][1000 genomes] |
| rs73452996 | 1.00[EUR][1000 genomes] |
| rs73455103 | 1.00[EUR][1000 genomes] |
| rs73455105 | 1.00[EUR][1000 genomes] |
| rs73728688 | 1.00[EUR][1000 genomes] |
| rs73728690 | 1.00[EUR][1000 genomes] |
| rs73728699 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv2753059 | chr7:136633745-136893745 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv831149 | chr7:136831665-137006468 | Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv608464 | chr7:136882925-136935459 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv967499 | chr7:136886596-136892139 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv608465 | chr7:136888610-136935459 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136887000-136897200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
