Variant report

Variant	rs1534460
Chromosome Location	chr7:137184912-137184913
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10238974	1.00[EUR][1000 genomes]
rs56701854	1.00[EUR][1000 genomes]
rs58274406	1.00[EUR][1000 genomes]
rs61018676	1.00[EUR][1000 genomes]
rs6959323	1.00[EUR][1000 genomes]
rs6961173	1.00[EUR][1000 genomes]
rs6971858	1.00[EUR][1000 genomes]
rs706570	1.00[EUR][1000 genomes]
rs73452984	1.00[EUR][1000 genomes]
rs73452985	1.00[EUR][1000 genomes]
rs73452996	1.00[EUR][1000 genomes]
rs73455103	1.00[EUR][1000 genomes]
rs73455105	1.00[EUR][1000 genomes]
rs73728688	1.00[EUR][1000 genomes]
rs73728690	1.00[EUR][1000 genomes]
rs73728699	1.00[EUR][1000 genomes]
rs73730628	1.00[EUR][1000 genomes]
rs7776802	1.00[EUR][1000 genomes]
rs7782945	1.00[EUR][1000 genomes]
rs7800546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
2	chr7:137167800-137192800	Weak transcription	Osteobl	bone
3	chr7:137170200-137193000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:137179400-137193200	Weak transcription	HSMM	muscle
5	chr7:137180200-137187400	Weak transcription	HSMMtube	muscle
6	chr7:137183000-137193200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:137184200-137193200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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