Variant report

Variant	rs7776802
Chromosome Location	chr7:137291916-137291917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1534460	1.00[EUR][1000 genomes]
rs57870599	1.00[AMR][1000 genomes]
rs58274406	1.00[EUR][1000 genomes]
rs59012599	1.00[AMR][1000 genomes]
rs6946550	1.00[AMR][1000 genomes]
rs6968296	1.00[AMR][1000 genomes]
rs6976136	1.00[MEX][hapmap]
rs706570	1.00[EUR][1000 genomes]
rs73730628	1.00[EUR][1000 genomes]
rs7781327	1.00[MEX][hapmap]
rs7782945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7794255	1.00[AMR][1000 genomes]
rs7800546	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9656489	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137277200-137296200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:137277200-137326800	Weak transcription	Osteobl	bone
3	chr7:137277400-137312000	Weak transcription	Brain Angular Gyrus	brain
4	chr7:137277600-137315400	Weak transcription	NH-A	brain
5	chr7:137277800-137292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:137278400-137304200	Weak transcription	Aorta	Aorta
7	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
8	chr7:137283400-137302600	Weak transcription	HSMM	muscle
9	chr7:137284600-137292200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:137286800-137292200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:137288000-137310800	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:137288800-137296600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:137289400-137296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:137291200-137294800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:137291800-137297400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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