Variant report

Variant	rs6976136
Chromosome Location	chr7:137342391-137342392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137337604..137340616-chr7:137341640..137344168,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7776802	1.00[MEX][hapmap]
rs7781327	1.00[MEX][hapmap]
rs834097	1.00[AMR][1000 genomes]
rs834098	1.00[AMR][1000 genomes]
rs9656489	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137320200-137352600	Weak transcription	Aorta	Aorta
2	chr7:137328400-137348000	Weak transcription	Fetal Brain Male	brain
3	chr7:137332800-137343000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:137338000-137342400	Weak transcription	Right Atrium	heart
5	chr7:137338000-137346400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:137340200-137342400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:137340200-137343600	Enhancers	Osteobl	bone
8	chr7:137340400-137342600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:137340400-137343200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:137340400-137343400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:137340600-137342400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:137340600-137342400	Enhancers	HSMM	muscle
13	chr7:137340600-137342800	Enhancers	Adipose Nuclei	Adipose
14	chr7:137340800-137342400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:137340800-137342400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:137340800-137342600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:137340800-137343000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:137340800-137343000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:137340800-137343000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:137340800-137343000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:137340800-137343200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:137340800-137351800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:137341000-137342800	Enhancers	Brain Hippocampus Middle	brain
24	chr7:137341000-137344000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:137341200-137342400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:137341200-137343400	Enhancers	HUVEC	blood vessel
27	chr7:137341200-137344000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:137341600-137342400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:137341600-137342400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr7:137341600-137342600	Weak transcription	Fetal Stomach	stomach
31	chr7:137341600-137342600	Enhancers	HSMMtube	muscle
32	chr7:137341600-137343600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr7:137341600-137344000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:137341600-137351800	Weak transcription	NHDF-Ad	bronchial
35	chr7:137341800-137342600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:137341800-137343000	Weak transcription	Brain Anterior Caudate	brain
37	chr7:137341800-137343800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:137341800-137344000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr7:137341800-137351800	Weak transcription	NH-A	brain
40	chr7:137342000-137342600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:137342000-137343200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:137342200-137349800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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