Variant report

Variant	rs61550883
Chromosome Location	chr7:108039616-108039617
allele	-/GT/TA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108038126..108040830-chr7:108044309..108045859,2	K562	blood:
2	chr7:108038876..108042615-chr7:108043454..108045817,3	K562	blood:
3	chr7:108037200..108040749-chr7:108041126..108043530,3	MCF-7	breast:
4	chr7:107930681..107933463-chr7:108038843..108040431,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11983030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333431	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1990162	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2108256	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2300037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300043	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2300049	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2300050	0.82[AFR][1000 genomes]
rs4141076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730307	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4730309	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4730320	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108014800-108043200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:108021400-108040800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:108021400-108043000	Weak transcription	HMEC	breast
4	chr7:108024000-108045600	Weak transcription	Brain Anterior Caudate	brain
5	chr7:108027800-108043000	Weak transcription	HUVEC	blood vessel
6	chr7:108033000-108041400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:108034600-108041400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:108034800-108043000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:108035000-108046600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:108036400-108049200	Weak transcription	Spleen	Spleen
11	chr7:108036600-108043000	Weak transcription	Fetal Intestine Large	intestine
12	chr7:108036600-108044600	Weak transcription	Brain Substantia Nigra	brain
13	chr7:108036600-108045600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:108036600-108046600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:108036600-108048000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:108036600-108048000	Weak transcription	Pancreas	Pancrea
17	chr7:108036600-108054200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:108036800-108046600	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:108037000-108040000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr7:108037000-108042400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:108037000-108044000	Weak transcription	Fetal Brain Male	brain
22	chr7:108037000-108046800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:108038000-108040000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:108038800-108041000	Genic enhancers	A549	lung
25	chr7:108039000-108043000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:108039200-108045000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links