Variant report

Variant	rs61563250
Chromosome Location	chr10:44094214-44094215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44092829..44096471-chr10:44100518..44103440,4	K562	blood:
2	chr10:44094103..44096869-chr10:44100518..44103220,3	K562	blood:
3	chr10:44066615..44070675-chr10:44091946..44095178,3	MCF-7	breast:
4	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:

Variant related genes	Relation type
ENSG00000198298	Chromatin interaction
ENSG00000196793	Chromatin interaction
ENSG00000232004	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11238596	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11238597	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12246417	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12269340	0.82[AFR][1000 genomes]
rs59017094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069438	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7096121	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73260732	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900073	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44091400-44095200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:44093000-44101600	Weak transcription	Primary T cells from cord blood	blood
6	chr10:44093200-44095200	Enhancers	Fetal Heart	heart
7	chr10:44093800-44094600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:44094000-44094400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:44094000-44094400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:44094000-44094400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:44094000-44094400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:44094000-44094400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:44094000-44094400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr10:44094000-44094400	Enhancers	Fetal Muscle Leg	muscle
15	chr10:44094000-44094600	Enhancers	Fetal Lung	lung
16	chr10:44094000-44094600	Enhancers	Fetal Stomach	stomach
17	chr10:44094000-44095000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:44094200-44094400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:44094200-44094400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:44094200-44094400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:44094200-44094400	Enhancers	Colon Smooth Muscle	Colon
22	chr10:44094200-44094400	Enhancers	Left Ventricle	heart
23	chr10:44094200-44095000	Enhancers	Spleen	Spleen
24	chr10:44094200-44095200	Enhancers	K562	blood
25	chr10:44094200-44095800	Weak transcription	Primary hematopoietic stem cells	blood

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