Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:168881835..168884881-chr1:168885530..168888220,3	MCF-7	breast:
2	chr1:168881895..168884232-chr1:169078691..169080929,2	MCF-7	breast:
3	chr1:168863923..168866260-chr1:168880539..168883068,2	K562	blood:
4	chr1:168876521..168880322-chr1:168881956..168884576,3	MCF-7	breast:
5	chr1:168881969..168885467-chr1:168887830..168890604,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP1B1-4	chr1:168882033-168883104	NONHSAT007448

No data

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12239491	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12405834	1.00[EUR][1000 genomes]
rs12405968	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12407010	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12407753	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12410966	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1322500	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13375532	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16861687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59682281	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74123028	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74123029	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74123030	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74123031	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74123035	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74123036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514914	0.84[ASN][1000 genomes]
rs7525887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547710	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7548313	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7548404	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857646	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
2	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
3	chr1:168882000-168885600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:168882000-168886400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea
6	chr1:168882800-168884000	Enhancers	Brain Germinal Matrix	brain
7	chr1:168882800-168884000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:168883000-168883400	Enhancers	Fetal Heart	heart
9	chr1:168883000-168883800	Enhancers	Psoas Muscle	Psoas
10	chr1:168883000-168884200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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