Variant report

Variant	rs857646
Chromosome Location	chr1:168829991-168829992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10919009	0.85[EUR][1000 genomes]
rs12239491	0.92[ASN][1000 genomes]
rs12405968	0.92[ASN][1000 genomes]
rs12407010	0.92[ASN][1000 genomes]
rs12407753	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12410966	0.92[ASN][1000 genomes]
rs1322495	0.87[EUR][1000 genomes]
rs1322500	0.92[ASN][1000 genomes]
rs13375532	0.92[ASN][1000 genomes]
rs1570332	0.87[EUR][1000 genomes]
rs1570333	0.85[EUR][1000 genomes]
rs1590286	0.85[EUR][1000 genomes]
rs16861687	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs200577	0.87[EUR][1000 genomes]
rs2419389	0.87[EUR][1000 genomes]
rs59682281	0.92[ASN][1000 genomes]
rs61567478	0.85[ASN][1000 genomes]
rs6427154	0.87[EUR][1000 genomes]
rs6670610	0.85[EUR][1000 genomes]
rs6686910	1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs704837	0.87[EUR][1000 genomes]
rs74123028	0.92[ASN][1000 genomes]
rs74123029	0.92[ASN][1000 genomes]
rs74123030	0.92[ASN][1000 genomes]
rs74123031	0.92[ASN][1000 genomes]
rs74123035	0.92[ASN][1000 genomes]
rs74123036	0.85[ASN][1000 genomes]
rs7513128	0.87[EUR][1000 genomes]
rs7525887	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7547710	0.92[ASN][1000 genomes]
rs7548313	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7548404	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs857632	0.87[EUR][1000 genomes]
rs857634	0.87[EUR][1000 genomes]
rs857636	0.87[EUR][1000 genomes]
rs857638	0.87[EUR][1000 genomes]
rs857639	0.85[EUR][1000 genomes]
rs857640	0.87[EUR][1000 genomes]
rs857642	0.87[EUR][1000 genomes]
rs857644	0.91[EUR][1000 genomes]
rs968047	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168818800-168830600	Weak transcription	Stomach Mucosa	stomach
2	chr1:168829800-168830200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:168829800-168831400	Enhancers	Fetal Intestine Large	intestine
4	chr1:168829800-168833600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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