Variant report

Variant	rs10919009
Chromosome Location	chr1:168857936-168857937
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12057370	0.82[EUR][1000 genomes]
rs12075363	1.00[ASN][1000 genomes]
rs1322495	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322502	1.00[ASN][1000 genomes]
rs1322503	1.00[ASN][1000 genomes]
rs1358949	1.00[ASN][1000 genomes]
rs1407479	1.00[ASN][1000 genomes]
rs1570332	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570333	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200577	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065130	1.00[ASN][1000 genomes]
rs2065131	1.00[ASN][1000 genomes]
rs2146199	1.00[ASN][1000 genomes]
rs2146202	1.00[ASN][1000 genomes]
rs2146203	1.00[ASN][1000 genomes]
rs2419389	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2419396	1.00[ASN][1000 genomes]
rs2419685	1.00[ASN][1000 genomes]
rs2900886	1.00[ASN][1000 genomes]
rs2984603	1.00[ASN][1000 genomes]
rs2984605	1.00[ASN][1000 genomes]
rs2984606	1.00[ASN][1000 genomes]
rs2984608	1.00[ASN][1000 genomes]
rs2984609	1.00[ASN][1000 genomes]
rs2984610	1.00[ASN][1000 genomes]
rs2984612	1.00[ASN][1000 genomes]
rs3007391	1.00[ASN][1000 genomes]
rs3007398	1.00[ASN][1000 genomes]
rs4656168	1.00[ASN][1000 genomes]
rs56834131	0.82[EUR][1000 genomes]
rs61801628	0.82[EUR][1000 genomes]
rs61801629	0.82[EUR][1000 genomes]
rs61801630	0.82[EUR][1000 genomes]
rs61801631	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801632	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801634	0.82[EUR][1000 genomes]
rs61801636	0.82[EUR][1000 genomes]
rs61801637	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801650	0.82[EUR][1000 genomes]
rs61801651	0.82[EUR][1000 genomes]
rs61801652	0.82[EUR][1000 genomes]
rs61801653	0.82[EUR][1000 genomes]
rs61801655	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801656	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427154	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670610	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681955	1.00[ASN][1000 genomes]
rs6686910	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704837	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513128	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541615	1.00[ASN][1000 genomes]
rs857632	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857634	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857636	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857638	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857639	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857640	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857642	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857644	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857646	0.85[EUR][1000 genomes]
rs911892	1.00[ASN][1000 genomes]
rs911893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs968047	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168847000-168858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:168857000-168862000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:168857200-168862000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:168857600-168858200	ZNF genes & repeats	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links