Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168884605..168887295-chr1:168929904..168931983,2	MCF-7	breast:
2	chr1:168881969..168885467-chr1:168887830..168890604,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10919009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1322495	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1570332	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1570333	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1590286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs200577	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2419389	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6427154	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6670610	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6686910	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs704837	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7513128	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857632	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857634	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857636	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857638	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857639	0.82[EUR][1000 genomes]
rs857640	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857642	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857644	0.80[EUR][1000 genomes]
rs968047	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168878000-168886600	Weak transcription	Fetal Lung	lung
2	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
3	chr1:168882000-168885600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:168882000-168886400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:168882200-168887600	Weak transcription	Pancreas	Pancrea
6	chr1:168883400-168888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:168884000-168886400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:168884000-168886600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:168884000-168886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:168884000-168887200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:168884000-168888200	Weak transcription	Brain Germinal Matrix	brain
12	chr1:168884200-168887000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:168884200-168887400	Weak transcription	Left Ventricle	heart
14	chr1:168884400-168886600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:168884400-168889800	Weak transcription	Psoas Muscle	Psoas

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