Variant report

Variant	rs61801631
Chromosome Location	chr1:168804660-168804661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168803305..168804821-chr1:168806997..168808555,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10919009	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057370	0.96[EUR][1000 genomes]
rs12075363	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322495	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322502	1.00[ASN][1000 genomes]
rs1322503	1.00[ASN][1000 genomes]
rs1358949	1.00[ASN][1000 genomes]
rs1407479	1.00[ASN][1000 genomes]
rs1570332	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570333	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590286	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200577	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065130	1.00[ASN][1000 genomes]
rs2065131	1.00[ASN][1000 genomes]
rs2146199	1.00[ASN][1000 genomes]
rs2146202	1.00[ASN][1000 genomes]
rs2146203	1.00[ASN][1000 genomes]
rs2419389	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2419396	1.00[ASN][1000 genomes]
rs2419685	1.00[ASN][1000 genomes]
rs2900886	1.00[ASN][1000 genomes]
rs2984603	1.00[ASN][1000 genomes]
rs2984605	1.00[ASN][1000 genomes]
rs2984606	1.00[ASN][1000 genomes]
rs2984608	1.00[ASN][1000 genomes]
rs2984609	1.00[ASN][1000 genomes]
rs2984610	1.00[ASN][1000 genomes]
rs2984612	1.00[ASN][1000 genomes]
rs3007391	1.00[ASN][1000 genomes]
rs3007398	1.00[ASN][1000 genomes]
rs4656168	1.00[ASN][1000 genomes]
rs56834131	0.96[EUR][1000 genomes]
rs61801628	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61801629	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61801630	0.96[EUR][1000 genomes]
rs61801632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427154	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670610	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681955	1.00[ASN][1000 genomes]
rs6686910	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704837	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513128	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541615	1.00[ASN][1000 genomes]
rs857632	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857634	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857636	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857638	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857639	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857640	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857642	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857644	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911892	1.00[ASN][1000 genomes]
rs968047	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3364789	chr1:168803428-168805376	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168801800-168806000	Enhancers	Fetal Heart	heart
2	chr1:168802800-168805800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:168803800-168804800	Weak transcription	Small Intestine	intestine
4	chr1:168803800-168805000	Weak transcription	Right Atrium	heart
5	chr1:168803800-168805200	Weak transcription	Pancreas	Pancrea
6	chr1:168803800-168805800	Enhancers	HepG2	liver
7	chr1:168803800-168814600	Weak transcription	Left Ventricle	heart
8	chr1:168804000-168805000	Weak transcription	Fetal Kidney	kidney
9	chr1:168804000-168805000	Weak transcription	Fetal Lung	lung
10	chr1:168804000-168805400	Weak transcription	A549	lung
11	chr1:168804000-168808200	Weak transcription	Stomach Mucosa	stomach
12	chr1:168804400-168805800	Enhancers	Fetal Intestine Large	intestine
13	chr1:168804600-168804800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr1:168804600-168804800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr1:168804600-168805600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:168804600-168805800	Enhancers	Fetal Intestine Small	intestine

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