Variant report

Variant	rs61801651
Chromosome Location	chr1:168817758-168817759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10919009	0.82[EUR][1000 genomes]
rs12057370	0.96[EUR][1000 genomes]
rs12075363	0.92[EUR][1000 genomes]
rs1322495	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1570332	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1570333	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1590286	0.82[EUR][1000 genomes]
rs200577	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2419389	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56834131	0.96[EUR][1000 genomes]
rs61801628	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61801629	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61801630	0.96[EUR][1000 genomes]
rs61801631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61801655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61801656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6427154	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6670610	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6686910	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs704837	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7513128	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857632	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857634	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857636	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857638	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857639	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs857640	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857642	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs857644	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs968047	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168812600-168817800	Weak transcription	Psoas Muscle	Psoas
2	chr1:168813000-168817800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:168815200-168818000	Weak transcription	Fetal Lung	lung
4	chr1:168817000-168818000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:168817000-168818600	Enhancers	Fetal Brain Male	brain
6	chr1:168817200-168819200	Enhancers	Fetal Heart	heart
7	chr1:168817400-168817800	Enhancers	Right Ventricle	heart
8	chr1:168817400-168818400	Enhancers	Fetal Muscle Leg	muscle
9	chr1:168817600-168817800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:168817600-168818000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:168817600-168818000	Enhancers	Lung	lung
12	chr1:168817600-168818000	Weak transcription	Stomach Mucosa	stomach
13	chr1:168817600-168818200	Enhancers	Fetal Brain Female	brain
14	chr1:168817600-168818200	Enhancers	Left Ventricle	heart
15	chr1:168817600-168818400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:168817600-168818400	Enhancers	Gastric	stomach
17	chr1:168817600-168818600	Enhancers	Esophagus	oesophagus
18	chr1:168817600-168818600	Enhancers	Placenta Amnion	Placenta Amnion

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