Variant report

Variant	rs61571205
Chromosome Location	chr3:155110110-155110111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155104170..155106327-chr3:155107833..155110799,2	MCF-7	breast:
2	chr3:155104875..155107543-chr3:155107995..155110700,2	K562	blood:
3	chr3:155108548..155110604-chr3:155127196..155130080,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28742885	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155105600-155114400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155108200-155110200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:155108600-155110200	Enhancers	Fetal Muscle Leg	muscle
4	chr3:155108800-155110400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:155109000-155110200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:155109000-155110200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:155109000-155110200	Enhancers	NH-A	brain
8	chr3:155109000-155110400	Enhancers	HSMMtube	muscle
9	chr3:155109000-155110600	Enhancers	HMEC	breast
10	chr3:155109200-155110200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:155109200-155110200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:155109200-155110200	Enhancers	HSMM	muscle
13	chr3:155109200-155110200	Flanking Active TSS	NHDF-Ad	bronchial
14	chr3:155109200-155110200	Enhancers	NHEK	skin
15	chr3:155109200-155110400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:155109200-155110400	Enhancers	Fetal Heart	heart
17	chr3:155109400-155110200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:155109400-155110200	Enhancers	Esophagus	oesophagus
19	chr3:155109400-155110400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:155109400-155110600	Enhancers	Left Ventricle	heart
21	chr3:155109800-155110200	Enhancers	Osteobl	bone
22	chr3:155109800-155110400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:155109800-155110600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:155110000-155110200	Enhancers	NHLF	lung
25	chr3:155110000-155110400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:155110000-155110400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:155110000-155111400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links