Variant report

Variant	rs28742885
Chromosome Location	chr3:155122287-155122288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11925808	0.90[EUR][1000 genomes]
rs28503947	0.90[EUR][1000 genomes]
rs4302412	0.90[EUR][1000 genomes]
rs4352412	0.90[EUR][1000 genomes]
rs4352413	0.90[EUR][1000 genomes]
rs4392458	0.90[EUR][1000 genomes]
rs4630983	0.90[EUR][1000 genomes]
rs57825069	0.90[EUR][1000 genomes]
rs58523386	0.90[EUR][1000 genomes]
rs61571205	1.00[ASN][1000 genomes]
rs6440982	0.90[EUR][1000 genomes]
rs6440983	0.90[EUR][1000 genomes]
rs6440984	0.90[EUR][1000 genomes]
rs6777732	0.90[EUR][1000 genomes]
rs6791188	0.90[EUR][1000 genomes]
rs6791222	0.90[EUR][1000 genomes]
rs6802130	0.90[EUR][1000 genomes]
rs6802336	0.90[EUR][1000 genomes]
rs6805227	0.90[EUR][1000 genomes]
rs7637223	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155121400-155125000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:155122000-155122800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr3:155122200-155122800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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