Variant report

Variant	rs58523386
Chromosome Location	chr3:155143387-155143388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155138815..155140992-chr3:155141903..155144535,2	MCF-7	breast:
2	chr3:155140732..155143652-chr3:155144981..155146803,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11918635	1.00[ASN][1000 genomes]
rs11925808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928539	1.00[ASN][1000 genomes]
rs16824965	1.00[ASN][1000 genomes]
rs16824986	1.00[ASN][1000 genomes]
rs16824992	1.00[ASN][1000 genomes]
rs28503947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28742885	0.90[EUR][1000 genomes]
rs34828234	1.00[ASN][1000 genomes]
rs4302412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4352412	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4352413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57461710	1.00[ASN][1000 genomes]
rs57825069	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57985049	1.00[ASN][1000 genomes]
rs58252841	0.81[AFR][1000 genomes]
rs6440982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009792	1.00[ASN][1000 genomes]
rs73011512	1.00[ASN][1000 genomes]
rs73011513	1.00[ASN][1000 genomes]
rs73011515	1.00[ASN][1000 genomes]
rs73011525	1.00[ASN][1000 genomes]
rs73873187	1.00[ASN][1000 genomes]
rs7637223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155142000-155143600	Weak transcription	Thymus	Thymus
2	chr3:155142200-155144200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:155142200-155144400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:155142200-155146800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:155142400-155144600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:155142600-155143400	Weak transcription	Fetal Brain Male	brain
7	chr3:155142600-155143400	Weak transcription	Fetal Brain Female	brain
8	chr3:155142600-155144800	Weak transcription	NHEK	skin
9	chr3:155142800-155143400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:155142800-155144600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:155143200-155143400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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