Variant report

Variant	rs57825069
Chromosome Location	chr3:155132925-155132926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155130861..155132542-chr3:155132605..155134388,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11918635	1.00[ASN][1000 genomes]
rs11925808	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928539	1.00[ASN][1000 genomes]
rs16824965	1.00[ASN][1000 genomes]
rs16824986	1.00[ASN][1000 genomes]
rs16824992	1.00[ASN][1000 genomes]
rs28503947	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28742885	0.90[EUR][1000 genomes]
rs34828234	1.00[ASN][1000 genomes]
rs4302412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4352412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4352413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630983	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57461710	1.00[ASN][1000 genomes]
rs57985049	1.00[ASN][1000 genomes]
rs58523386	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440984	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791222	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802336	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73009792	1.00[ASN][1000 genomes]
rs73011512	1.00[ASN][1000 genomes]
rs73011513	1.00[ASN][1000 genomes]
rs73011515	1.00[ASN][1000 genomes]
rs73011525	1.00[ASN][1000 genomes]
rs73873187	1.00[ASN][1000 genomes]
rs7637223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155125800-155134200	Weak transcription	Osteobl	bone
2	chr3:155131000-155135400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155131000-155138800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:155131200-155135000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:155131200-155136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:155132800-155133000	Enhancers	Fetal Intestine Large	intestine
7	chr3:155132800-155133200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links