Variant report
| Variant | rs61574805 |
|---|---|
| Chromosome Location | chr3:111787576-111787577 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:62)
| rs_ID | r2[population] |
|---|---|
| rs55715811 | 0.92[AFR][1000 genomes] |
| rs55753652 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs55765202 | 0.88[AFR][1000 genomes] |
| rs55785728 | 0.92[AFR][1000 genomes] |
| rs55955608 | 0.92[AFR][1000 genomes] |
| rs56008240 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs56060014 | 0.92[AFR][1000 genomes] |
| rs56154908 | 0.81[AFR][1000 genomes] |
| rs56173481 | 0.92[AFR][1000 genomes] |
| rs56188318 | 0.87[AFR][1000 genomes] |
| rs56235140 | 0.92[AFR][1000 genomes] |
| rs56238410 | 0.84[AFR][1000 genomes] |
| rs56404440 | 0.88[AFR][1000 genomes] |
| rs56801397 | 0.92[AFR][1000 genomes] |
| rs57851365 | 0.92[AFR][1000 genomes] |
| rs58766302 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs58840068 | 0.92[AFR][1000 genomes] |
| rs58899626 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs59888587 | 0.92[AFR][1000 genomes] |
| rs60011279 | 0.90[AFR][1000 genomes] |
| rs60032749 | 0.92[AFR][1000 genomes] |
| rs60100513 | 0.92[AFR][1000 genomes] |
| rs60504992 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs60529752 | 0.92[AFR][1000 genomes] |
| rs60562037 | 0.92[AFR][1000 genomes] |
| rs60596183 | 0.88[AFR][1000 genomes] |
| rs61233651 | 0.88[AFR][1000 genomes] |
| rs61250978 | 0.92[AFR][1000 genomes] |
| rs6765246 | 0.92[AFR][1000 genomes] |
| rs6765524 | 0.92[AFR][1000 genomes] |
| rs6769390 | 0.88[AFR][1000 genomes] |
| rs6769595 | 0.88[AFR][1000 genomes] |
| rs6771394 | 0.92[AFR][1000 genomes] |
| rs6771530 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6787297 | 0.81[AFR][1000 genomes] |
| rs6794018 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6794057 | 0.88[AFR][1000 genomes] |
| rs6794944 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6806972 | 0.92[AFR][1000 genomes] |
| rs73856331 | 0.88[AFR][1000 genomes] |
| rs73856333 | 0.88[AFR][1000 genomes] |
| rs73856334 | 0.88[AFR][1000 genomes] |
| rs73856335 | 0.92[AFR][1000 genomes] |
| rs73856336 | 0.92[AFR][1000 genomes] |
| rs73856337 | 0.92[AFR][1000 genomes] |
| rs73856338 | 0.92[AFR][1000 genomes] |
| rs73856339 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73856340 | 0.92[AFR][1000 genomes] |
| rs73856342 | 0.92[AFR][1000 genomes] |
| rs73856343 | 0.92[AFR][1000 genomes] |
| rs73856345 | 0.92[AFR][1000 genomes] |
| rs73856346 | 0.92[AFR][1000 genomes] |
| rs73856347 | 0.92[AFR][1000 genomes] |
| rs73856348 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73856349 | 0.83[AMR][1000 genomes] |
| rs73856351 | 0.83[AMR][1000 genomes] |
| rs7620996 | 0.92[AFR][1000 genomes] |
| rs9755693 | 0.92[AFR][1000 genomes] |
| rs9755713 | 0.98[AFR][1000 genomes] |
| rs9755719 | 0.92[AFR][1000 genomes] |
| rs9756558 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9756806 | 0.92[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:111780800-111793800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr3:111785600-111789600 | Weak transcription | Fetal Thymus | thymus |
| 3 | chr3:111785600-111790200 | Weak transcription | Thymus | Thymus |
