Variant report

Variant	rs6794057
Chromosome Location	chr3:111783968-111783969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111780283..111781991-chr3:111783090..111785256,2	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs168151	0.82[ASN][1000 genomes]
rs16859128	1.00[EUR][1000 genomes]
rs16859129	1.00[EUR][1000 genomes]
rs16859130	1.00[EUR][1000 genomes]
rs16859132	1.00[EUR][1000 genomes]
rs55715811	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55753652	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55765202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55785728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55913382	1.00[EUR][1000 genomes]
rs55955608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55968036	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56008240	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56060014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115505	1.00[EUR][1000 genomes]
rs56127415	1.00[EUR][1000 genomes]
rs56154908	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56173481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56188318	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs56200934	1.00[EUR][1000 genomes]
rs56235140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56238410	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56404440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56801397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57441805	1.00[EUR][1000 genomes]
rs57606311	1.00[EUR][1000 genomes]
rs57621014	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57643560	1.00[EUR][1000 genomes]
rs57851365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58430773	1.00[EUR][1000 genomes]
rs58489543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58766302	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58840068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58899626	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59888587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60011279	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60031977	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60032749	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60100513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60361907	1.00[EUR][1000 genomes]
rs60504992	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60529752	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60562037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60596183	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60746737	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61233651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61250978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61574805	0.88[AFR][1000 genomes]
rs61729755	1.00[ASN][1000 genomes]
rs6438029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438036	1.00[EUR][1000 genomes]
rs6765246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768781	1.00[EUR][1000 genomes]
rs6769390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771530	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6776494	1.00[EUR][1000 genomes]
rs6779013	1.00[EUR][1000 genomes]
rs6785852	1.00[EUR][1000 genomes]
rs6787297	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794018	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794944	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809741	1.00[EUR][1000 genomes]
rs73853296	1.00[EUR][1000 genomes]
rs73853298	1.00[EUR][1000 genomes]
rs73853300	1.00[EUR][1000 genomes]
rs73853302	1.00[EUR][1000 genomes]
rs73853307	1.00[EUR][1000 genomes]
rs73853320	1.00[EUR][1000 genomes]
rs73853321	1.00[EUR][1000 genomes]
rs73853325	1.00[EUR][1000 genomes]
rs73853326	1.00[EUR][1000 genomes]
rs73853328	1.00[EUR][1000 genomes]
rs73853364	1.00[EUR][1000 genomes]
rs73853368	1.00[EUR][1000 genomes]
rs73853377	1.00[EUR][1000 genomes]
rs73856303	1.00[EUR][1000 genomes]
rs73856304	1.00[EUR][1000 genomes]
rs73856305	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73856331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73856338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856339	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73856340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856344	1.00[EUR][1000 genomes]
rs73856345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856348	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73856349	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856351	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856356	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73856357	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73856358	1.00[EUR][1000 genomes]
rs73856362	1.00[EUR][1000 genomes]
rs73856369	1.00[EUR][1000 genomes]
rs7620996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7621597	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627472	1.00[EUR][1000 genomes]
rs7631233	1.00[EUR][1000 genomes]
rs7648969	1.00[EUR][1000 genomes]
rs9755693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9755713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9755719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9756558	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9756806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111780800-111793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links