Variant report

Variant	rs73853328
Chromosome Location	chr3:111916778-111916779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111916552..111919160-chr3:111921905..111924645,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs16859128	1.00[EUR][1000 genomes]
rs16859129	1.00[EUR][1000 genomes]
rs16859130	1.00[EUR][1000 genomes]
rs16859132	1.00[EUR][1000 genomes]
rs55715811	1.00[EUR][1000 genomes]
rs55753652	1.00[EUR][1000 genomes]
rs55765202	1.00[EUR][1000 genomes]
rs55785728	1.00[EUR][1000 genomes]
rs55792066	1.00[AMR][1000 genomes]
rs55913382	1.00[EUR][1000 genomes]
rs55955608	1.00[EUR][1000 genomes]
rs55968036	1.00[EUR][1000 genomes]
rs55992226	1.00[AMR][1000 genomes]
rs56008240	1.00[EUR][1000 genomes]
rs56060014	1.00[EUR][1000 genomes]
rs56115505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56127415	1.00[EUR][1000 genomes]
rs56154908	1.00[EUR][1000 genomes]
rs56173481	1.00[EUR][1000 genomes]
rs56200934	1.00[EUR][1000 genomes]
rs56235140	1.00[EUR][1000 genomes]
rs56238410	1.00[EUR][1000 genomes]
rs56259975	1.00[AMR][1000 genomes]
rs56404440	1.00[EUR][1000 genomes]
rs56801397	1.00[EUR][1000 genomes]
rs57441805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57606311	1.00[EUR][1000 genomes]
rs57621014	1.00[EUR][1000 genomes]
rs57643560	1.00[EUR][1000 genomes]
rs57851365	1.00[EUR][1000 genomes]
rs58430773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58489543	1.00[EUR][1000 genomes]
rs58766302	1.00[EUR][1000 genomes]
rs58899626	1.00[EUR][1000 genomes]
rs58938674	1.00[AMR][1000 genomes]
rs59888587	1.00[EUR][1000 genomes]
rs60011279	1.00[EUR][1000 genomes]
rs60031977	1.00[EUR][1000 genomes]
rs60032749	1.00[EUR][1000 genomes]
rs60100513	1.00[EUR][1000 genomes]
rs60361907	1.00[EUR][1000 genomes]
rs60504992	1.00[EUR][1000 genomes]
rs60529752	1.00[EUR][1000 genomes]
rs60562037	1.00[EUR][1000 genomes]
rs60596183	1.00[EUR][1000 genomes]
rs60746737	1.00[EUR][1000 genomes]
rs61233651	1.00[EUR][1000 genomes]
rs61250978	1.00[EUR][1000 genomes]
rs61440289	1.00[AMR][1000 genomes]
rs61471473	1.00[AMR][1000 genomes]
rs6438029	1.00[EUR][1000 genomes]
rs6438030	1.00[EUR][1000 genomes]
rs6438036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765246	1.00[EUR][1000 genomes]
rs6765524	1.00[EUR][1000 genomes]
rs6768781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769390	1.00[EUR][1000 genomes]
rs6769595	1.00[EUR][1000 genomes]
rs6770127	1.00[AMR][1000 genomes]
rs6771394	1.00[EUR][1000 genomes]
rs6771530	1.00[EUR][1000 genomes]
rs6774728	1.00[AMR][1000 genomes]
rs6776494	1.00[EUR][1000 genomes]
rs6779013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6785852	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787297	1.00[EUR][1000 genomes]
rs6794018	1.00[EUR][1000 genomes]
rs6794057	1.00[EUR][1000 genomes]
rs6794944	1.00[EUR][1000 genomes]
rs6806972	1.00[EUR][1000 genomes]
rs6809741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853296	1.00[EUR][1000 genomes]
rs73853298	1.00[EUR][1000 genomes]
rs73853300	1.00[EUR][1000 genomes]
rs73853302	1.00[EUR][1000 genomes]
rs73853307	1.00[EUR][1000 genomes]
rs73853320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853330	1.00[AMR][1000 genomes]
rs73853364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853369	1.00[AMR][1000 genomes]
rs73853377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853386	1.00[AMR][1000 genomes]
rs73853402	1.00[AMR][1000 genomes]
rs73856303	1.00[EUR][1000 genomes]
rs73856304	1.00[EUR][1000 genomes]
rs73856305	1.00[EUR][1000 genomes]
rs73856331	1.00[EUR][1000 genomes]
rs73856333	1.00[EUR][1000 genomes]
rs73856334	1.00[EUR][1000 genomes]
rs73856335	1.00[EUR][1000 genomes]
rs73856336	1.00[EUR][1000 genomes]
rs73856337	1.00[EUR][1000 genomes]
rs73856338	1.00[EUR][1000 genomes]
rs73856339	1.00[EUR][1000 genomes]
rs73856340	1.00[EUR][1000 genomes]
rs73856342	1.00[EUR][1000 genomes]
rs73856343	1.00[EUR][1000 genomes]
rs73856344	1.00[EUR][1000 genomes]
rs73856345	1.00[EUR][1000 genomes]
rs73856346	1.00[EUR][1000 genomes]
rs73856347	1.00[EUR][1000 genomes]
rs73856348	1.00[EUR][1000 genomes]
rs73856349	1.00[EUR][1000 genomes]
rs73856350	1.00[AMR][1000 genomes]
rs73856351	1.00[EUR][1000 genomes]
rs73856352	1.00[EUR][1000 genomes]
rs73856353	1.00[EUR][1000 genomes]
rs73856356	1.00[EUR][1000 genomes]
rs73856357	1.00[EUR][1000 genomes]
rs73856358	1.00[EUR][1000 genomes]
rs73856359	1.00[AMR][1000 genomes]
rs73856362	1.00[EUR][1000 genomes]
rs73856369	1.00[EUR][1000 genomes]
rs7621597	1.00[EUR][1000 genomes]
rs7621703	1.00[AMR][1000 genomes]
rs7622023	1.00[AMR][1000 genomes]
rs7627472	1.00[EUR][1000 genomes]
rs7631233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9755693	1.00[EUR][1000 genomes]
rs9755713	1.00[EUR][1000 genomes]
rs9755719	1.00[EUR][1000 genomes]
rs9756558	1.00[EUR][1000 genomes]
rs9756806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111906200-111918800	Weak transcription	Fetal Heart	heart
2	chr3:111913000-111923200	Weak transcription	Pancreas	Pancrea
3	chr3:111913200-111930000	Weak transcription	Left Ventricle	heart
4	chr3:111913600-111918400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:111915400-111923400	Weak transcription	Aorta	Aorta
6	chr3:111916200-111916800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:111916200-111917200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:111916400-111919000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:111916600-111917000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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