Variant report

Variant	rs6774728
Chromosome Location	chr3:111838613-111838614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111824816..111827651-chr3:111837771..111840373,2	K562	blood:

rs_ID	r²[population]
rs168151	1.00[CEU][hapmap]
rs16858901	1.00[CEU][hapmap]
rs55792066	1.00[AMR][1000 genomes]
rs55992226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115505	1.00[AMR][1000 genomes]
rs56259975	1.00[AMR][1000 genomes]
rs57441805	1.00[AMR][1000 genomes]
rs58430773	1.00[AMR][1000 genomes]
rs58938674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61440289	1.00[AMR][1000 genomes]
rs6438029	1.00[CEU][hapmap]
rs6438030	1.00[CEU][hapmap]
rs6438036	1.00[AMR][1000 genomes]
rs6765246	1.00[CEU][hapmap]
rs6765524	1.00[CEU][hapmap]
rs6768781	1.00[AMR][1000 genomes]
rs6770127	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6779013	1.00[AMR][1000 genomes]
rs6785852	1.00[AMR][1000 genomes]
rs6787297	1.00[CEU][hapmap]
rs6794944	1.00[CEU][hapmap]
rs6806972	1.00[CEU][hapmap]
rs6809741	1.00[AMR][1000 genomes]
rs73853320	1.00[AMR][1000 genomes]
rs73853321	1.00[AMR][1000 genomes]
rs73853325	1.00[AMR][1000 genomes]
rs73853326	1.00[AMR][1000 genomes]
rs73853328	1.00[AMR][1000 genomes]
rs73853330	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853364	1.00[AMR][1000 genomes]
rs73853368	1.00[AMR][1000 genomes]
rs73853369	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853377	1.00[AMR][1000 genomes]
rs73853386	1.00[AMR][1000 genomes]
rs73853402	1.00[AMR][1000 genomes]
rs73856350	1.00[AMR][1000 genomes]
rs73856359	1.00[AMR][1000 genomes]
rs7621703	1.00[AMR][1000 genomes]
rs7622023	1.00[AMR][1000 genomes]
rs7631233	1.00[AMR][1000 genomes]
rs7644889	1.00[CEU][hapmap]
rs7648969	1.00[AMR][1000 genomes]
rs774859	1.00[CEU][hapmap]

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
3	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
5	chr3:111812600-111840200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:111819000-111840400	Weak transcription	Fetal Stomach	stomach
7	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:111821200-111843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:111821400-111839000	Weak transcription	Osteobl	bone
10	chr3:111821400-111843600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:111822000-111844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:111822400-111839200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:111825800-111844400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:111830600-111853200	Weak transcription	Lung	lung
15	chr3:111830800-111845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:111831200-111838800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:111831400-111843000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:111832000-111844600	Weak transcription	Hela-S3	cervix
19	chr3:111832400-111840600	Enhancers	Primary B cells from cord blood	blood
20	chr3:111832600-111841600	Enhancers	Primary B cells from peripheral blood	blood
21	chr3:111833200-111844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:111833600-111839600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:111834200-111853800	Weak transcription	Fetal Intestine Small	intestine
24	chr3:111834400-111838800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:111834400-111848000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:111834600-111841600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:111835200-111840800	Strong transcription	NH-A	brain
28	chr3:111835600-111839000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:111835600-111839000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:111835800-111839000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:111835800-111839400	Enhancers	Primary T cells from cord blood	blood
32	chr3:111835800-111840600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr3:111835800-111841000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr3:111835800-111844400	Weak transcription	Fetal Heart	heart
35	chr3:111835800-111849600	Weak transcription	Small Intestine	intestine
36	chr3:111836000-111841200	Enhancers	Primary hematopoietic stem cells	blood
37	chr3:111836200-111838800	Weak transcription	Brain Anterior Caudate	brain
38	chr3:111836200-111840200	Weak transcription	Pancreas	Pancrea
39	chr3:111836200-111840800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr3:111836200-111843600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:111836200-111844200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:111836200-111845000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:111836200-111849200	Weak transcription	Aorta	Aorta
44	chr3:111836400-111838800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:111836400-111839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr3:111836600-111846400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr3:111836800-111839200	Enhancers	Thymus	Thymus
48	chr3:111837000-111840800	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr3:111837400-111841200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr3:111837600-111839600	Strong transcription	HMEC	breast

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