Variant report
| Variant | rs73853330 |
|---|---|
| Chromosome Location | chr3:111923210-111923211 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:111916552..111919160-chr3:111921905..111924645,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs55792066 | 1.00[AMR][1000 genomes] |
| rs55992226 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56115505 | 1.00[AMR][1000 genomes] |
| rs56259975 | 1.00[AMR][1000 genomes] |
| rs57441805 | 1.00[AMR][1000 genomes] |
| rs58430773 | 1.00[AMR][1000 genomes] |
| rs58938674 | 1.00[AMR][1000 genomes] |
| rs61440289 | 1.00[AMR][1000 genomes] |
| rs61471473 | 1.00[AMR][1000 genomes] |
| rs6438036 | 1.00[AMR][1000 genomes] |
| rs6768781 | 1.00[AMR][1000 genomes] |
| rs6770127 | 1.00[AMR][1000 genomes] |
| rs6774728 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6779013 | 1.00[AMR][1000 genomes] |
| rs6785852 | 1.00[AMR][1000 genomes] |
| rs6809741 | 1.00[AMR][1000 genomes] |
| rs73853320 | 1.00[AMR][1000 genomes] |
| rs73853321 | 1.00[AMR][1000 genomes] |
| rs73853325 | 1.00[AMR][1000 genomes] |
| rs73853326 | 1.00[AMR][1000 genomes] |
| rs73853328 | 1.00[AMR][1000 genomes] |
| rs73853364 | 1.00[AMR][1000 genomes] |
| rs73853368 | 1.00[AMR][1000 genomes] |
| rs73853369 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853377 | 1.00[AMR][1000 genomes] |
| rs73853386 | 1.00[AMR][1000 genomes] |
| rs73853402 | 1.00[AMR][1000 genomes] |
| rs73856350 | 1.00[AMR][1000 genomes] |
| rs73856359 | 1.00[AMR][1000 genomes] |
| rs7621703 | 1.00[AMR][1000 genomes] |
| rs7622023 | 1.00[AMR][1000 genomes] |
| rs7631233 | 1.00[AMR][1000 genomes] |
| rs7648969 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010219 | chr3:111856709-111923647 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv10307 | chr3:111903974-112087686 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv591291 | chr3:111914624-111962851 | ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv591292 | chr3:111914624-111993915 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:111913200-111930000 | Weak transcription | Left Ventricle | heart |
| 2 | chr3:111915400-111923400 | Weak transcription | Aorta | Aorta |
| 3 | chr3:111919600-111925200 | Weak transcription | Fetal Heart | heart |
