Variant report

Variant	rs61471473
Chromosome Location	chr3:112096433-112096434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55792066	1.00[AMR][1000 genomes]
rs6438036	1.00[AMR][1000 genomes]
rs6768781	1.00[AMR][1000 genomes]
rs6779013	1.00[AMR][1000 genomes]
rs6785852	1.00[AMR][1000 genomes]
rs73853326	1.00[AMR][1000 genomes]
rs73853328	1.00[AMR][1000 genomes]
rs73853330	1.00[AMR][1000 genomes]
rs73853364	1.00[AMR][1000 genomes]
rs73853368	1.00[AMR][1000 genomes]
rs73853369	1.00[AMR][1000 genomes]
rs73853377	1.00[AMR][1000 genomes]
rs73853386	1.00[AMR][1000 genomes]
rs73853402	1.00[AMR][1000 genomes]
rs7631233	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877341	chr3:112079277-112125521	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1002567	chr3:112088498-112144063	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2830128	chr3:112090292-112144026	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv591294	chr3:112091220-112208750	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv591295	chr3:112093413-112113334	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112077600-112107200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:112084800-112096800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:112085800-112096600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:112085800-112101400	Weak transcription	Aorta	Aorta
5	chr3:112091400-112098400	Enhancers	Adipose Nuclei	Adipose
6	chr3:112092600-112096600	Enhancers	Hela-S3	cervix
7	chr3:112092800-112098000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:112093400-112097000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:112094000-112098800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:112094000-112099600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:112094200-112098400	Enhancers	Fetal Lung	lung
12	chr3:112094400-112097000	Enhancers	Right Atrium	heart
13	chr3:112094400-112100200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:112094400-112104400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:112094600-112097600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr3:112094800-112096800	Enhancers	HUVEC	blood vessel
17	chr3:112094800-112098600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:112095000-112097000	Enhancers	Duodenum Mucosa	Duodenum
19	chr3:112095000-112104200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:112095200-112098400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:112095200-112098800	Enhancers	Osteobl	bone
22	chr3:112095400-112096800	Enhancers	Stomach Mucosa	stomach
23	chr3:112095400-112097200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr3:112095400-112097200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr3:112095400-112103600	Weak transcription	Fetal Thymus	thymus
26	chr3:112095600-112096600	Weak transcription	Placenta	Placenta
27	chr3:112095600-112096600	Weak transcription	Left Ventricle	heart
28	chr3:112095600-112096800	Weak transcription	Ovary	ovary
29	chr3:112095600-112097400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:112095600-112097600	Enhancers	NHEK	skin
31	chr3:112095600-112097800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:112095600-112098200	Enhancers	Fetal Kidney	kidney
33	chr3:112095600-112098400	Enhancers	NH-A	brain
34	chr3:112095600-112098600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:112095800-112098800	Enhancers	HMEC	breast
36	chr3:112096000-112096800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr3:112096000-112097000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr3:112096000-112097200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr3:112096000-112098000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr3:112096000-112098400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr3:112096000-112098400	Enhancers	Primary B cells from peripheral blood	blood
42	chr3:112096000-112098800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:112096000-112098800	Enhancers	Primary B cells from cord blood	blood
44	chr3:112096200-112096600	Weak transcription	Small Intestine	intestine
45	chr3:112096200-112096800	Weak transcription	Fetal Stomach	stomach
46	chr3:112096200-112097200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:112096400-112096800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr3:112096400-112097000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr3:112096400-112097000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr3:112096400-112097000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links