Variant report

Variant	rs55792066
Chromosome Location	chr3:111992426-111992427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55992226	1.00[AMR][1000 genomes]
rs56115505	1.00[AMR][1000 genomes]
rs56259975	1.00[AMR][1000 genomes]
rs57441805	1.00[AMR][1000 genomes]
rs58430773	1.00[AMR][1000 genomes]
rs58938674	1.00[AMR][1000 genomes]
rs61440289	1.00[AMR][1000 genomes]
rs61471473	1.00[AMR][1000 genomes]
rs6438036	1.00[AMR][1000 genomes]
rs6768781	1.00[AMR][1000 genomes]
rs6774728	1.00[AMR][1000 genomes]
rs6779013	1.00[AMR][1000 genomes]
rs6785852	1.00[AMR][1000 genomes]
rs6809741	1.00[AMR][1000 genomes]
rs73853320	1.00[AMR][1000 genomes]
rs73853321	1.00[AMR][1000 genomes]
rs73853325	1.00[AMR][1000 genomes]
rs73853326	1.00[AMR][1000 genomes]
rs73853328	1.00[AMR][1000 genomes]
rs73853330	1.00[AMR][1000 genomes]
rs73853364	1.00[AMR][1000 genomes]
rs73853368	1.00[AMR][1000 genomes]
rs73853369	1.00[AMR][1000 genomes]
rs73853377	1.00[AMR][1000 genomes]
rs73853386	1.00[AMR][1000 genomes]
rs73853402	1.00[AMR][1000 genomes]
rs73856350	1.00[AMR][1000 genomes]
rs73856359	1.00[AMR][1000 genomes]
rs7621703	1.00[AMR][1000 genomes]
rs7622023	1.00[AMR][1000 genomes]
rs7631233	1.00[AMR][1000 genomes]
rs7648969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111972200-111999000	Weak transcription	Left Ventricle	heart
2	chr3:111992000-111992600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:111992200-111992600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:111992200-111992800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:111992200-111992800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:111992200-111993000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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