Variant report

Variant	rs73856350
Chromosome Location	chr3:111797200-111797201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55792066	1.00[AMR][1000 genomes]
rs55992226	1.00[AMR][1000 genomes]
rs56115505	1.00[AMR][1000 genomes]
rs56259975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57441805	1.00[AMR][1000 genomes]
rs58430773	1.00[AMR][1000 genomes]
rs58938674	1.00[AMR][1000 genomes]
rs61440289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438036	1.00[AMR][1000 genomes]
rs6768781	1.00[AMR][1000 genomes]
rs6770127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6774728	1.00[AMR][1000 genomes]
rs6779013	1.00[AMR][1000 genomes]
rs6785852	1.00[AMR][1000 genomes]
rs6809741	1.00[AMR][1000 genomes]
rs73853320	1.00[AMR][1000 genomes]
rs73853321	1.00[AMR][1000 genomes]
rs73853325	1.00[AMR][1000 genomes]
rs73853326	1.00[AMR][1000 genomes]
rs73853328	1.00[AMR][1000 genomes]
rs73853330	1.00[AMR][1000 genomes]
rs73853364	1.00[AMR][1000 genomes]
rs73853368	1.00[AMR][1000 genomes]
rs73853369	1.00[AMR][1000 genomes]
rs73853377	1.00[AMR][1000 genomes]
rs73853386	1.00[AMR][1000 genomes]
rs73856359	1.00[AMR][1000 genomes]
rs7621703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7622023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7631233	1.00[AMR][1000 genomes]
rs7648969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111794600-111797600	Enhancers	Fetal Thymus	thymus
2	chr3:111794600-111797800	Enhancers	Thymus	Thymus
3	chr3:111794800-111804800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:111795200-111803000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:111795200-111804200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:111795200-111804800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:111796600-111797600	Enhancers	GM12878-XiMat	blood
8	chr3:111796800-111797400	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:111796800-111797400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:111797200-111797400	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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