Variant report

Variant rs56115505
Chromosome Location chr3:111855667-111855668
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111840800-111855800 Weak transcription NH-A brain
2 chr3:111844800-111855800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:111845600-111855800 Weak transcription H1 Cell Line embryonic stem cell
4 chr3:111848200-111857000 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr3:111848400-111855800 Weak transcription H9 Cell Line embryonic stem cell
6 chr3:111848400-111856000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr3:111848400-111856800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr3:111852200-111857000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
9 chr3:111852200-111857600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr3:111852200-111863400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr3:111852400-111856200 Enhancers Fetal Thymus thymus
12 chr3:111852400-111856200 Enhancers Thymus Thymus
13 chr3:111852400-111856600 Enhancers Primary T killer memory cells from peripheral blood blood
14 chr3:111852400-111856600 Flanking Active TSS GM12878-XiMat blood
15 chr3:111852400-111857000 Enhancers Primary B cells from cord blood blood
16 chr3:111852400-111857200 Enhancers Primary B cells from peripheral blood blood
17 chr3:111852600-111856600 Enhancers Primary T helper cells fromperipheralblood blood
18 chr3:111852600-111857600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr3:111852800-111856600 Enhancers Primary T helper naive cells from peripheral blood blood
20 chr3:111853000-111856200 Weak transcription Primary monocytes fromperipheralblood blood
21 chr3:111853000-111856400 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr3:111853200-111856200 Enhancers Primary T cells from cord blood blood
23 chr3:111853200-111857000 Enhancers Stomach Mucosa stomach
24 chr3:111853400-111855800 Weak transcription Left Ventricle heart
25 chr3:111853400-111867400 Weak transcription Gastric stomach
26 chr3:111853600-111856400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
27 chr3:111853600-111857000 Enhancers Primary T helper naive cells fromperipheralblood blood
28 chr3:111853800-111857000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr3:111854200-111855800 Weak transcription Duodenum Mucosa Duodenum
30 chr3:111854200-111856400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
31 chr3:111854200-111856800 Weak transcription Fetal Intestine Small intestine
32 chr3:111854200-111857000 Enhancers Primary T helper cells PMA-I stimulated --
33 chr3:111854600-111855800 Weak transcription Primary T cells fromperipheralblood blood
34 chr3:111854600-111856400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr3:111854600-111857000 Enhancers HUES48 Cell Line embryonic stem cell
36 chr3:111854600-111858000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr3:111854800-111856200 Weak transcription Pancreatic Islets Pancreatic Islet
38 chr3:111854800-111857600 Enhancers iPS-18 Cell Line embryonic stem cell
39 chr3:111854800-111857800 Enhancers iPS-15b Cell Line embryonic stem cell
40 chr3:111855000-111857400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr3:111855000-111857600 Enhancers iPS-20b Cell Line embryonic stem cell
42 chr3:111855000-111858000 Enhancers ES-I3 Cell Line embryonic stem cell
43 chr3:111855200-111858000 Enhancers HUES64 Cell Line embryonic stem cell
44 chr3:111855400-111856800 Enhancers Primary T killer naive cells fromperipheralblood blood
45 chr3:111855400-111857000 Enhancers HUES6 Cell Line embryonic stem cell
46 chr3:111855400-111857600 Enhancers Primary hematopoietic stem cells short term culture blood
47 chr3:111855400-111858000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
48 chr3:111855600-111855800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr3:111855600-111856000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr3:111855600-111856200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived

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