Variant report

Variant	rs58938674
Chromosome Location	chr3:111832244-111832245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55792066	1.00[AMR][1000 genomes]
rs55992226	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56115505	1.00[AMR][1000 genomes]
rs56259975	1.00[AMR][1000 genomes]
rs57441805	1.00[AMR][1000 genomes]
rs58430773	1.00[AMR][1000 genomes]
rs61440289	1.00[AMR][1000 genomes]
rs6438036	1.00[AMR][1000 genomes]
rs6768781	1.00[AMR][1000 genomes]
rs6770127	1.00[AMR][1000 genomes]
rs6774728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779013	1.00[AMR][1000 genomes]
rs6785852	1.00[AMR][1000 genomes]
rs6809741	1.00[AMR][1000 genomes]
rs73853320	1.00[AMR][1000 genomes]
rs73853321	1.00[AMR][1000 genomes]
rs73853325	1.00[AMR][1000 genomes]
rs73853326	1.00[AMR][1000 genomes]
rs73853328	1.00[AMR][1000 genomes]
rs73853330	1.00[AMR][1000 genomes]
rs73853364	1.00[AMR][1000 genomes]
rs73853368	1.00[AMR][1000 genomes]
rs73853369	1.00[AMR][1000 genomes]
rs73853377	1.00[AMR][1000 genomes]
rs73853386	1.00[AMR][1000 genomes]
rs73856350	1.00[AMR][1000 genomes]
rs73856359	1.00[AMR][1000 genomes]
rs7621703	1.00[AMR][1000 genomes]
rs7622023	1.00[AMR][1000 genomes]
rs7631233	1.00[AMR][1000 genomes]
rs7648969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
3	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
5	chr3:111812400-111835800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:111812600-111840200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:111814400-111836000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:111817200-111833600	Weak transcription	HSMMtube	muscle
9	chr3:111819000-111840400	Weak transcription	Fetal Stomach	stomach
10	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:111821000-111835800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:111821200-111833800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:111821200-111833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:111821200-111834000	Weak transcription	HSMM	muscle
15	chr3:111821200-111843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:111821400-111839000	Weak transcription	Osteobl	bone
17	chr3:111821400-111843600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:111821600-111834800	Weak transcription	HUVEC	blood vessel
19	chr3:111822000-111844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:111822400-111839200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:111822600-111833600	Weak transcription	Fetal Intestine Small	intestine
22	chr3:111822800-111835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:111823000-111834400	Weak transcription	A549	lung
24	chr3:111823400-111837800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:111825600-111833600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:111825600-111838600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:111825800-111835400	Weak transcription	Aorta	Aorta
28	chr3:111825800-111835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:111825800-111844400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:111826000-111833800	Weak transcription	Primary T cells from cord blood	blood
31	chr3:111827000-111838600	Weak transcription	Spleen	Spleen
32	chr3:111828000-111833200	Strong transcription	NH-A	brain
33	chr3:111828200-111838600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:111828400-111833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:111828400-111838200	Weak transcription	Stomach Mucosa	stomach
36	chr3:111828600-111833600	Weak transcription	Gastric	stomach
37	chr3:111828600-111835600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:111828800-111835600	Weak transcription	Left Ventricle	heart
39	chr3:111829200-111833200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr3:111829600-111836400	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:111830000-111834200	Strong transcription	Pancreas	Pancrea
42	chr3:111830000-111835600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:111830000-111837800	Strong transcription	NHEK	skin
44	chr3:111830600-111834000	Enhancers	Fetal Thymus	thymus
45	chr3:111830600-111835600	Enhancers	Thymus	Thymus
46	chr3:111830600-111853200	Weak transcription	Lung	lung
47	chr3:111830800-111833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:111830800-111834000	Weak transcription	Fetal Heart	heart
49	chr3:111830800-111834600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:111830800-111845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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