The 2.0 version of rSNPBase

Variant report

Variant rs55992226
Chromosome Location chr3:111834286-111834287
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111810400-111852000 Weak transcription Esophagus oesophagus
2 chr3:111812000-111844000 Weak transcription Colonic Mucosa Colon
3 chr3:111812000-111845600 Weak transcription Duodenum Mucosa Duodenum
4 chr3:111812200-111853000 Weak transcription Right Ventricle heart
5 chr3:111812400-111835800 Weak transcription H9 Cell Line embryonic stem cell
6 chr3:111812600-111840200 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr3:111814400-111836000 Weak transcription Rectal Smooth Muscle rectum
8 chr3:111819000-111840400 Weak transcription Fetal Stomach stomach
9 chr3:111819600-111847800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr3:111821000-111835800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr3:111821200-111843600 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr3:111821400-111839000 Weak transcription Osteobl bone
13 chr3:111821400-111843600 Weak transcription Muscle Satellite Cultured Cells --
14 chr3:111821600-111834800 Weak transcription HUVEC blood vessel
15 chr3:111822000-111844600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr3:111822400-111839200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:111822800-111835600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr3:111823000-111834400 Weak transcription A549 lung
19 chr3:111823400-111837800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:111825600-111838600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr3:111825800-111835400 Weak transcription Aorta Aorta
22 chr3:111825800-111835600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr3:111825800-111844400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr3:111827000-111838600 Weak transcription Spleen Spleen
25 chr3:111828200-111838600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr3:111828400-111838200 Weak transcription Stomach Mucosa stomach
27 chr3:111828600-111835600 Weak transcription H1 Cell Line embryonic stem cell
28 chr3:111828800-111835600 Weak transcription Left Ventricle heart
29 chr3:111829600-111836400 Strong transcription Sigmoid Colon Sigmoid Colon
30 chr3:111830000-111835600 Weak transcription Stomach Smooth Muscle stomach
31 chr3:111830000-111837800 Strong transcription NHEK skin
32 chr3:111830600-111835600 Enhancers Thymus Thymus
33 chr3:111830600-111853200 Weak transcription Lung lung
34 chr3:111830800-111834600 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr3:111830800-111845400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr3:111831000-111835800 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr3:111831200-111837400 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr3:111831200-111838800 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr3:111831400-111836200 Strong transcription HUES48 Cell Line embryonic stem cell
40 chr3:111831400-111843000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr3:111832000-111844600 Weak transcription Hela-S3 cervix
42 chr3:111832400-111835400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr3:111832400-111838600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr3:111832400-111840600 Enhancers Primary B cells from cord blood blood
45 chr3:111832600-111835600 Weak transcription Fetal Intestine Large intestine
46 chr3:111832600-111841600 Enhancers Primary B cells from peripheral blood blood
47 chr3:111832800-111836200 Enhancers Fetal Muscle Leg muscle
48 chr3:111833000-111838600 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr3:111833200-111835200 Weak transcription NH-A brain
50 chr3:111833200-111835400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015