Variant report

Variant	rs16859128
Chromosome Location	chr3:111779914-111779915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs16859126	0.94[YRI][hapmap]
rs16859129	1.00[CHB][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859130	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859132	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682351	0.95[YRI][hapmap]
rs4682352	0.94[YRI][hapmap]
rs55715811	1.00[EUR][1000 genomes]
rs55753652	1.00[EUR][1000 genomes]
rs55765202	1.00[EUR][1000 genomes]
rs55785728	1.00[EUR][1000 genomes]
rs55913382	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55955608	1.00[EUR][1000 genomes]
rs55968036	1.00[EUR][1000 genomes]
rs56008240	1.00[EUR][1000 genomes]
rs56060014	1.00[EUR][1000 genomes]
rs56115505	1.00[EUR][1000 genomes]
rs56127415	1.00[EUR][1000 genomes]
rs56154908	1.00[EUR][1000 genomes]
rs56173481	1.00[EUR][1000 genomes]
rs56200934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56235140	1.00[EUR][1000 genomes]
rs56238410	1.00[EUR][1000 genomes]
rs56268566	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56404440	1.00[EUR][1000 genomes]
rs56801397	1.00[EUR][1000 genomes]
rs57441805	1.00[EUR][1000 genomes]
rs57606311	1.00[EUR][1000 genomes]
rs57621014	1.00[EUR][1000 genomes]
rs57643560	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57851365	1.00[EUR][1000 genomes]
rs58414055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58430773	1.00[EUR][1000 genomes]
rs58489543	1.00[EUR][1000 genomes]
rs58766302	1.00[EUR][1000 genomes]
rs58899626	1.00[EUR][1000 genomes]
rs59888587	1.00[EUR][1000 genomes]
rs60011279	1.00[EUR][1000 genomes]
rs60031977	1.00[EUR][1000 genomes]
rs60032749	1.00[EUR][1000 genomes]
rs60100513	1.00[EUR][1000 genomes]
rs60361907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60504992	1.00[EUR][1000 genomes]
rs60529752	1.00[EUR][1000 genomes]
rs60562037	1.00[EUR][1000 genomes]
rs60596183	1.00[EUR][1000 genomes]
rs60746737	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61233651	1.00[EUR][1000 genomes]
rs61250978	1.00[EUR][1000 genomes]
rs6438029	1.00[EUR][1000 genomes]
rs6438030	1.00[EUR][1000 genomes]
rs6438036	1.00[EUR][1000 genomes]
rs6765246	1.00[EUR][1000 genomes]
rs6765524	1.00[EUR][1000 genomes]
rs6768781	1.00[EUR][1000 genomes]
rs6769390	1.00[EUR][1000 genomes]
rs6769595	1.00[EUR][1000 genomes]
rs6771394	1.00[EUR][1000 genomes]
rs6771530	1.00[EUR][1000 genomes]
rs6776494	1.00[EUR][1000 genomes]
rs6779013	1.00[EUR][1000 genomes]
rs6785852	1.00[EUR][1000 genomes]
rs6787297	1.00[EUR][1000 genomes]
rs6794018	1.00[EUR][1000 genomes]
rs6794057	1.00[EUR][1000 genomes]
rs6794944	1.00[EUR][1000 genomes]
rs6806972	1.00[EUR][1000 genomes]
rs6809741	1.00[EUR][1000 genomes]
rs73853296	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73853298	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73853300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73853302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853307	1.00[EUR][1000 genomes]
rs73853320	1.00[EUR][1000 genomes]
rs73853321	1.00[EUR][1000 genomes]
rs73853325	1.00[EUR][1000 genomes]
rs73853326	1.00[EUR][1000 genomes]
rs73853328	1.00[EUR][1000 genomes]
rs73853364	1.00[EUR][1000 genomes]
rs73853368	1.00[EUR][1000 genomes]
rs73853377	1.00[EUR][1000 genomes]
rs73856303	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73856304	1.00[EUR][1000 genomes]
rs73856305	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73856331	1.00[EUR][1000 genomes]
rs73856333	1.00[EUR][1000 genomes]
rs73856334	1.00[EUR][1000 genomes]
rs73856335	1.00[EUR][1000 genomes]
rs73856336	1.00[EUR][1000 genomes]
rs73856337	1.00[EUR][1000 genomes]
rs73856338	1.00[EUR][1000 genomes]
rs73856339	1.00[EUR][1000 genomes]
rs73856340	1.00[EUR][1000 genomes]
rs73856342	1.00[EUR][1000 genomes]
rs73856343	1.00[EUR][1000 genomes]
rs73856344	1.00[EUR][1000 genomes]
rs73856345	1.00[EUR][1000 genomes]
rs73856346	1.00[EUR][1000 genomes]
rs73856347	1.00[EUR][1000 genomes]
rs73856348	1.00[EUR][1000 genomes]
rs73856349	1.00[EUR][1000 genomes]
rs73856351	1.00[EUR][1000 genomes]
rs73856352	1.00[EUR][1000 genomes]
rs73856353	1.00[EUR][1000 genomes]
rs73856356	1.00[EUR][1000 genomes]
rs73856357	1.00[EUR][1000 genomes]
rs73856358	1.00[EUR][1000 genomes]
rs73856362	1.00[EUR][1000 genomes]
rs73856369	1.00[EUR][1000 genomes]
rs7621597	1.00[EUR][1000 genomes]
rs7627472	1.00[EUR][1000 genomes]
rs7631233	1.00[EUR][1000 genomes]
rs7648969	1.00[EUR][1000 genomes]
rs9755693	1.00[EUR][1000 genomes]
rs9755713	1.00[EUR][1000 genomes]
rs9755719	1.00[EUR][1000 genomes]
rs9756558	1.00[EUR][1000 genomes]
rs9756806	1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111772600-111780200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111775800-111780000	Weak transcription	A549	lung
3	chr3:111779800-111780000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:111779800-111780000	Enhancers	Placenta	Placenta
5	chr3:111779800-111780600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:111779800-111780600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:111779800-111780800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:111779800-111780800	Enhancers	NH-A	brain
9	chr3:111779800-111780800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links