Variant report

Variant	rs73856369
Chromosome Location	chr3:111810118-111810119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111696629..111698580-chr3:111808489..111810447,2	MCF-7	breast:
2	chr3:111804469..111806477-chr3:111808239..111810533,4	MCF-7	breast:
3	chr3:111809767..111811797-chr3:111828280..111831117,2	MCF-7	breast:
4	chr3:111803684..111807677-chr3:111807818..111813217,8	K562	blood:

Variant related genes	Relation type
ENSG00000114529	Chromatin interaction
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs16859128	1.00[EUR][1000 genomes]
rs16859129	1.00[EUR][1000 genomes]
rs16859130	1.00[EUR][1000 genomes]
rs16859132	1.00[EUR][1000 genomes]
rs55715811	1.00[EUR][1000 genomes]
rs55753652	1.00[EUR][1000 genomes]
rs55765202	1.00[EUR][1000 genomes]
rs55785728	1.00[EUR][1000 genomes]
rs55913382	1.00[EUR][1000 genomes]
rs55955608	1.00[EUR][1000 genomes]
rs55968036	1.00[EUR][1000 genomes]
rs56008240	1.00[EUR][1000 genomes]
rs56060014	1.00[EUR][1000 genomes]
rs56115505	1.00[EUR][1000 genomes]
rs56127415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56154908	1.00[EUR][1000 genomes]
rs56173481	1.00[EUR][1000 genomes]
rs56200934	1.00[EUR][1000 genomes]
rs56235140	1.00[EUR][1000 genomes]
rs56238410	1.00[EUR][1000 genomes]
rs56404440	1.00[EUR][1000 genomes]
rs56801397	1.00[EUR][1000 genomes]
rs57441805	1.00[EUR][1000 genomes]
rs57606311	1.00[EUR][1000 genomes]
rs57621014	1.00[EUR][1000 genomes]
rs57643560	1.00[EUR][1000 genomes]
rs57851365	1.00[EUR][1000 genomes]
rs58430773	1.00[EUR][1000 genomes]
rs58489543	1.00[EUR][1000 genomes]
rs58766302	1.00[EUR][1000 genomes]
rs58899626	1.00[EUR][1000 genomes]
rs59888587	1.00[EUR][1000 genomes]
rs59967418	1.00[AMR][1000 genomes]
rs60011279	1.00[EUR][1000 genomes]
rs60031977	1.00[EUR][1000 genomes]
rs60032749	1.00[EUR][1000 genomes]
rs60100513	1.00[EUR][1000 genomes]
rs60361907	1.00[EUR][1000 genomes]
rs60504992	1.00[EUR][1000 genomes]
rs60529752	1.00[EUR][1000 genomes]
rs60562037	1.00[EUR][1000 genomes]
rs60596183	1.00[EUR][1000 genomes]
rs60746737	1.00[EUR][1000 genomes]
rs61233651	1.00[EUR][1000 genomes]
rs61250978	1.00[EUR][1000 genomes]
rs61384643	1.00[AFR][1000 genomes]
rs6438029	1.00[EUR][1000 genomes]
rs6438030	1.00[EUR][1000 genomes]
rs6438036	1.00[EUR][1000 genomes]
rs6765246	1.00[EUR][1000 genomes]
rs6765524	1.00[EUR][1000 genomes]
rs6768781	1.00[EUR][1000 genomes]
rs6769390	1.00[EUR][1000 genomes]
rs6769595	1.00[EUR][1000 genomes]
rs6771394	1.00[EUR][1000 genomes]
rs6771530	1.00[EUR][1000 genomes]
rs6776494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779013	1.00[EUR][1000 genomes]
rs6785852	1.00[EUR][1000 genomes]
rs6787297	1.00[EUR][1000 genomes]
rs6794018	1.00[EUR][1000 genomes]
rs6794057	1.00[EUR][1000 genomes]
rs6794944	1.00[EUR][1000 genomes]
rs6806972	1.00[EUR][1000 genomes]
rs6809741	1.00[EUR][1000 genomes]
rs73853296	1.00[EUR][1000 genomes]
rs73853298	1.00[EUR][1000 genomes]
rs73853300	1.00[EUR][1000 genomes]
rs73853302	1.00[EUR][1000 genomes]
rs73853307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853320	1.00[EUR][1000 genomes]
rs73853321	1.00[EUR][1000 genomes]
rs73853325	1.00[EUR][1000 genomes]
rs73853326	1.00[EUR][1000 genomes]
rs73853328	1.00[EUR][1000 genomes]
rs73853364	1.00[EUR][1000 genomes]
rs73853368	1.00[EUR][1000 genomes]
rs73853377	1.00[EUR][1000 genomes]
rs73856303	1.00[EUR][1000 genomes]
rs73856304	1.00[EUR][1000 genomes]
rs73856305	1.00[EUR][1000 genomes]
rs73856331	1.00[EUR][1000 genomes]
rs73856333	1.00[EUR][1000 genomes]
rs73856334	1.00[EUR][1000 genomes]
rs73856335	1.00[EUR][1000 genomes]
rs73856336	1.00[EUR][1000 genomes]
rs73856337	1.00[EUR][1000 genomes]
rs73856338	1.00[EUR][1000 genomes]
rs73856339	1.00[EUR][1000 genomes]
rs73856340	1.00[EUR][1000 genomes]
rs73856342	1.00[EUR][1000 genomes]
rs73856343	1.00[EUR][1000 genomes]
rs73856344	1.00[EUR][1000 genomes]
rs73856345	1.00[EUR][1000 genomes]
rs73856346	1.00[EUR][1000 genomes]
rs73856347	1.00[EUR][1000 genomes]
rs73856348	1.00[EUR][1000 genomes]
rs73856349	1.00[EUR][1000 genomes]
rs73856351	1.00[EUR][1000 genomes]
rs73856352	1.00[EUR][1000 genomes]
rs73856353	1.00[EUR][1000 genomes]
rs73856356	1.00[EUR][1000 genomes]
rs73856357	1.00[EUR][1000 genomes]
rs73856358	1.00[EUR][1000 genomes]
rs73856362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621597	1.00[EUR][1000 genomes]
rs7627472	1.00[EUR][1000 genomes]
rs7631233	1.00[EUR][1000 genomes]
rs7648969	1.00[EUR][1000 genomes]
rs9755693	1.00[EUR][1000 genomes]
rs9755713	1.00[EUR][1000 genomes]
rs9755719	1.00[EUR][1000 genomes]
rs9756558	1.00[EUR][1000 genomes]
rs9756806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111806000-111821600	Weak transcription	Lung	lung
2	chr3:111806400-111811200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:111806400-111811200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:111806400-111811400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:111806800-111811200	Weak transcription	NHLF	lung
6	chr3:111806800-111811400	Weak transcription	Gastric	stomach
7	chr3:111806800-111813600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:111806800-111816400	Weak transcription	Aorta	Aorta
9	chr3:111807000-111811000	Weak transcription	Osteobl	bone
10	chr3:111807000-111811200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:111807000-111811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:111807000-111811200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:111807000-111811200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:111807000-111811200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:111807000-111811200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:111807000-111811200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:111807000-111811400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:111807000-111811400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:111807000-111811400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:111807000-111811400	Enhancers	Stomach Mucosa	stomach
21	chr3:111807000-111812200	Enhancers	Fetal Intestine Small	intestine
22	chr3:111807000-111816200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:111807200-111811000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:111807200-111811000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:111807200-111811400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:111807400-111811200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:111807400-111811200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:111807400-111811400	Weak transcription	HMEC	breast
29	chr3:111807400-111814200	Weak transcription	A549	lung
30	chr3:111808600-111810200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:111808600-111810400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr3:111808600-111811000	Enhancers	Fetal Heart	heart
33	chr3:111808600-111812000	Enhancers	Colonic Mucosa	Colon
34	chr3:111808800-111810200	Enhancers	Pancreas	Pancrea
35	chr3:111808800-111810200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr3:111808800-111810200	Enhancers	HSMMtube	muscle
37	chr3:111808800-111810600	Enhancers	Fetal Intestine Large	intestine
38	chr3:111808800-111810800	Enhancers	Fetal Muscle Leg	muscle
39	chr3:111808800-111811400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:111808800-111811400	Enhancers	Right Ventricle	heart
41	chr3:111808800-111811600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:111808800-111812200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:111808800-111812200	Enhancers	Fetal Thymus	thymus
44	chr3:111809000-111810200	Enhancers	HUVEC	blood vessel
45	chr3:111809000-111810400	Enhancers	Small Intestine	intestine
46	chr3:111809000-111810800	Enhancers	Placenta	Placenta
47	chr3:111809000-111812000	Enhancers	GM12878-XiMat	blood
48	chr3:111809200-111810200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
49	chr3:111809200-111810200	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr3:111809200-111810400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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