Variant report

Variant	rs58414055
Chromosome Location	chr3:111779966-111779967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16859128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16859129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16859130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16859132	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4682352	0.81[AFR][1000 genomes]
rs55913382	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55968036	0.82[AFR][1000 genomes]
rs56200934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56268566	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57643560	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60361907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60746737	0.94[AFR][1000 genomes]
rs73853296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853302	1.00[AMR][1000 genomes]
rs73856303	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73856305	0.96[AFR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111772600-111780200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111775800-111780000	Weak transcription	A549	lung
3	chr3:111779800-111780000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:111779800-111780000	Enhancers	Placenta	Placenta
5	chr3:111779800-111780600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:111779800-111780600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:111779800-111780800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:111779800-111780800	Enhancers	NH-A	brain
9	chr3:111779800-111780800	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links