Variant report

Variant	rs16858901
Chromosome Location	chr3:111648683-111648684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111648173-111648803	HCT-116	colon:	n/a	n/a
2	TCF7L2	chr3:111648310-111648753	HCT-116	colon:	n/a	n/a
3	SP1	chr3:111648085-111648830	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

rs_ID	r²[population]
rs11921814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923746	0.84[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1295993	1.00[CEU][hapmap]
rs13065448	0.82[YRI][hapmap]
rs168151	1.00[CEU][hapmap]
rs16858490	1.00[CEU][hapmap]
rs4145113	0.88[YRI][hapmap]
rs6438029	1.00[CEU][hapmap]
rs6438030	1.00[CEU][hapmap]
rs6765246	1.00[CEU][hapmap]
rs6765524	1.00[CEU][hapmap]
rs6770127	1.00[CEU][hapmap]
rs6774728	1.00[CEU][hapmap]
rs6781879	0.82[YRI][hapmap]
rs6783948	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787297	1.00[CEU][hapmap]
rs6794944	1.00[CEU][hapmap]
rs6805359	0.82[YRI][hapmap]
rs6806972	1.00[CEU][hapmap]
rs712520	1.00[EUR][1000 genomes]
rs712521	1.00[EUR][1000 genomes]
rs7644889	1.00[CEU][hapmap]
rs774859	1.00[CEU][hapmap]

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
10	chr3:111640000-111651800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:111640200-111651200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:111641800-111650600	Weak transcription	Aorta	Aorta
13	chr3:111641800-111658200	Weak transcription	Ovary	ovary
14	chr3:111642200-111674400	Weak transcription	Lung	lung
15	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
16	chr3:111642800-111653600	Weak transcription	NHDF-Ad	bronchial
17	chr3:111642800-111654400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:111643000-111652800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:111643000-111654600	Weak transcription	Fetal Lung	lung
22	chr3:111643400-111649800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:111643400-111653400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:111643400-111654400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:111643400-111655200	Weak transcription	Stomach Mucosa	stomach
26	chr3:111643400-111656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:111643400-111657800	Weak transcription	Gastric	stomach
28	chr3:111643400-111658200	Weak transcription	HepG2	liver
29	chr3:111643400-111660000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:111643600-111649800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:111643600-111651800	Weak transcription	Small Intestine	intestine
32	chr3:111643600-111654800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:111643600-111658000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:111644000-111650600	Weak transcription	Pancreas	Pancrea
35	chr3:111644600-111656200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:111644800-111650800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:111644800-111654400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:111645000-111650000	Weak transcription	NHLF	lung
39	chr3:111645000-111650800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:111645000-111652000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:111645000-111658600	Weak transcription	Fetal Heart	heart
42	chr3:111645200-111650200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:111645200-111650600	Weak transcription	Right Ventricle	heart
44	chr3:111645200-111663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:111645400-111650600	Weak transcription	Adipose Nuclei	Adipose
46	chr3:111645400-111651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:111645400-111651600	Strong transcription	NHEK	skin
48	chr3:111645400-111651800	Weak transcription	Fetal Intestine Large	intestine
49	chr3:111645400-111652600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:111645400-111652600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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