Variant report

Variant	rs4145113
Chromosome Location	chr3:111652208-111652209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111651028..111653319-chr3:111657022..111659606,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10934123	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10934124	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10934125	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12487003	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12491508	0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12493023	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12493285	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12495997	0.86[CHB][hapmap];0.96[EUR][1000 genomes]
rs12631997	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1282944	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1282955	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1282957	0.86[EUR][1000 genomes]
rs1282960	0.84[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1282961	0.84[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs13065448	0.95[CEU][hapmap];0.83[CHB][hapmap];0.91[EUR][1000 genomes]
rs1443077	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1553223	0.88[JPT][hapmap]
rs16858868	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16858901	0.88[YRI][hapmap]
rs1709211	0.86[EUR][1000 genomes]
rs2137898	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2175907	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2175908	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3749297	0.84[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3749298	0.83[JPT][hapmap]
rs4608659	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60821969	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62277591	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62277592	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6438021	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6784285	0.88[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6785554	0.91[EUR][1000 genomes]
rs6786655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802150	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs712509	0.88[JPT][hapmap]
rs754914	0.83[JPT][hapmap]
rs7618633	0.83[CEU][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs7618841	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs955566	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs968825	0.84[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9860202	0.83[JPT][hapmap]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
9	chr3:111641800-111658200	Weak transcription	Ovary	ovary
10	chr3:111642200-111674400	Weak transcription	Lung	lung
11	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
12	chr3:111642800-111653600	Weak transcription	NHDF-Ad	bronchial
13	chr3:111642800-111654400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:111643000-111652800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:111643000-111654600	Weak transcription	Fetal Lung	lung
18	chr3:111643400-111653400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:111643400-111654400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:111643400-111655200	Weak transcription	Stomach Mucosa	stomach
21	chr3:111643400-111656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:111643400-111657800	Weak transcription	Gastric	stomach
23	chr3:111643400-111658200	Weak transcription	HepG2	liver
24	chr3:111643400-111660000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:111643600-111654800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:111643600-111658000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:111644600-111656200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr3:111644800-111654400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:111645000-111658600	Weak transcription	Fetal Heart	heart
30	chr3:111645200-111663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:111645400-111652600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:111645400-111652600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:111645400-111654600	Weak transcription	HSMMtube	muscle
34	chr3:111645400-111655000	Weak transcription	Fetal Kidney	kidney
35	chr3:111645400-111656200	Weak transcription	Fetal Stomach	stomach
36	chr3:111645400-111665400	Weak transcription	Right Atrium	heart
37	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:111645600-111654800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:111645800-111658400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:111645800-111658400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:111646400-111671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:111647200-111652800	Strong transcription	HMEC	breast
43	chr3:111648600-111658000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:111648600-111659600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
46	chr3:111649000-111653600	Strong transcription	HSMM	muscle
47	chr3:111649200-111652800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:111649200-111653600	Strong transcription	NH-A	brain
49	chr3:111649400-111653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:111649400-111653400	Strong transcription	Hela-S3	cervix

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