Variant report

Variant	rs1709211
Chromosome Location	chr3:111625541-111625542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111625216-111625735	A549	lung:	n/a	n/a
2	POLR2A	chr3:111625214-111626408	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr3:111625488-111625600	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr3:111625443-111625604	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:111625118-111625856	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111623012..111625590-chr3:111626194..111628474,2	MCF-7	breast:

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10934123	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10934124	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10934125	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12487003	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491508	0.87[EUR][1000 genomes]
rs12493023	0.85[EUR][1000 genomes]
rs12493285	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12495997	0.86[EUR][1000 genomes]
rs12631997	0.84[EUR][1000 genomes]
rs1282938	0.82[ASN][1000 genomes]
rs1282944	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1282948	0.91[ASN][1000 genomes]
rs1282955	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1282956	0.94[ASN][1000 genomes]
rs1282957	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1282958	0.94[ASN][1000 genomes]
rs1282960	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1282961	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065448	0.81[EUR][1000 genomes]
rs1443077	0.85[EUR][1000 genomes]
rs1587456	0.82[ASN][1000 genomes]
rs16858868	0.87[EUR][1000 genomes]
rs2137898	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2175907	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2175908	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3749297	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4145113	0.86[EUR][1000 genomes]
rs4608659	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60821969	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277591	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62277592	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6438021	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785554	0.81[EUR][1000 genomes]
rs6786655	0.86[EUR][1000 genomes]
rs6802150	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7618633	0.83[EUR][1000 genomes]
rs7618841	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs955566	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs968825	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:111604400-111629400	Weak transcription	Ovary	ovary
5	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
9	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
13	chr3:111620600-111626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:111621200-111626400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:111622000-111625600	Strong transcription	Fetal Stomach	stomach
17	chr3:111622400-111630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:111622400-111630400	Weak transcription	Pancreas	Pancrea
19	chr3:111622600-111628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:111622800-111630200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:111623200-111625600	Genic enhancers	NHEK	skin
22	chr3:111623400-111626400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:111623400-111641200	Weak transcription	Lung	lung
24	chr3:111623600-111626400	Weak transcription	Left Ventricle	heart
25	chr3:111623600-111626600	Weak transcription	Right Ventricle	heart
26	chr3:111623600-111626800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:111623600-111629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:111623800-111628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:111623800-111629200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:111623800-111629200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:111624000-111627200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:111624000-111628400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:111624000-111628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:111624000-111629400	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:111624200-111625600	Weak transcription	Osteobl	bone
37	chr3:111624200-111626200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:111624200-111627000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:111624200-111627400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:111624200-111627400	Weak transcription	NH-A	brain
41	chr3:111624200-111628800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:111624200-111629200	Weak transcription	NHDF-Ad	bronchial
43	chr3:111624200-111629400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:111624200-111629400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:111624200-111629600	Weak transcription	Fetal Brain Male	brain
46	chr3:111624400-111626200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:111624600-111626400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:111624600-111628600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:111624600-111629400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr3:111624600-111632800	Enhancers	Fetal Heart	heart

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