Variant report

Variant	rs12493285
Chromosome Location	chr3:111636953-111636954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111636515..111638251-chr3:111642842..111645026,2	MCF-7	breast:
2	chr3:111631571..111633991-chr3:111636308..111638451,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10934123	1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10934124	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10934125	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491508	0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12493023	0.86[EUR][1000 genomes]
rs12495997	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs12631997	0.85[EUR][1000 genomes]
rs1282944	0.83[CEU][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1282948	0.90[ASN][1000 genomes]
rs1282955	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282956	0.88[ASN][1000 genomes]
rs1282957	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282958	0.88[ASN][1000 genomes]
rs1282960	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282961	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13065448	0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs1443077	0.86[EUR][1000 genomes]
rs1500046	0.90[YRI][hapmap]
rs16858868	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1709211	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2137898	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175907	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175908	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3749297	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145113	0.84[CEU][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4608659	0.85[EUR][1000 genomes]
rs60821969	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277591	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62277592	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6438021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784285	0.93[ASW][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6785554	0.80[EUR][1000 genomes]
rs6786655	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6802150	0.86[EUR][1000 genomes]
rs6805339	0.90[YRI][hapmap]
rs7618633	0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7618841	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs955566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs968825	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111623400-111641200	Weak transcription	Lung	lung
3	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
6	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
8	chr3:111630200-111637400	Weak transcription	Aorta	Aorta
9	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:111630600-111637000	Weak transcription	Fetal Lung	lung
11	chr3:111630600-111637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
14	chr3:111630800-111637000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:111631000-111637200	Weak transcription	Fetal Intestine Large	intestine
17	chr3:111631000-111639200	Weak transcription	Fetal Brain Male	brain
18	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
19	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
21	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:111632400-111639200	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr3:111632600-111637400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:111632600-111637600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:111632800-111637000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr3:111632800-111637400	Weak transcription	Gastric	stomach
29	chr3:111632800-111639200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:111633000-111637600	Weak transcription	Ovary	ovary
31	chr3:111633000-111637600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:111633400-111637400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:111634200-111637200	Genic enhancers	NHEK	skin
34	chr3:111634200-111637400	Weak transcription	NHLF	lung
35	chr3:111634400-111637200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:111634400-111637400	Weak transcription	Fetal Kidney	kidney
37	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:111634600-111637000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr3:111634600-111637600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:111634600-111637600	Genic enhancers	HMEC	breast
41	chr3:111634600-111640200	Genic enhancers	Hela-S3	cervix
42	chr3:111635000-111637000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:111635200-111637000	Weak transcription	Left Ventricle	heart
45	chr3:111635200-111637400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:111635200-111637400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:111635200-111638400	Weak transcription	HepG2	liver
48	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:111635400-111637400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:111635400-111637600	Weak transcription	Primary B cells from cord blood	blood

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