Variant report

Variant	rs1282956
Chromosome Location	chr3:111626920-111626921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111625885-111628452	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr3:111626636-111630673	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111623012..111625590-chr3:111626194..111628474,2	MCF-7	breast:

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10934124	0.86[ASN][1000 genomes]
rs10934125	0.88[ASN][1000 genomes]
rs12487003	0.88[ASN][1000 genomes]
rs12493285	0.88[ASN][1000 genomes]
rs1282938	0.88[ASN][1000 genomes]
rs1282948	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1282955	0.94[ASN][1000 genomes]
rs1282957	0.94[ASN][1000 genomes]
rs1282958	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1282960	0.94[ASN][1000 genomes]
rs1282961	0.94[ASN][1000 genomes]
rs1500044	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1587456	0.88[ASN][1000 genomes]
rs1709211	0.94[ASN][1000 genomes]
rs2137898	0.87[ASN][1000 genomes]
rs2175907	0.87[ASN][1000 genomes]
rs2175908	0.85[ASN][1000 genomes]
rs3749297	0.88[ASN][1000 genomes]
rs6438021	0.88[ASN][1000 genomes]
rs7618841	0.85[ASN][1000 genomes]
rs955566	0.87[ASN][1000 genomes]
rs968825	0.88[ASN][1000 genomes]
rs9819082	0.81[ASN][1000 genomes]
rs9840718	0.81[ASN][1000 genomes]
rs9857092	0.82[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111629400	Weak transcription	Ovary	ovary
4	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
8	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
11	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:111622400-111630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:111622400-111630400	Weak transcription	Pancreas	Pancrea
14	chr3:111622600-111628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:111622800-111630200	Weak transcription	Fetal Intestine Small	intestine
16	chr3:111623400-111641200	Weak transcription	Lung	lung
17	chr3:111623600-111629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:111623800-111628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:111623800-111629200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:111623800-111629200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:111624000-111627200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:111624000-111628400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:111624000-111628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:111624000-111629400	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:111624200-111627000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:111624200-111627400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:111624200-111627400	Weak transcription	NH-A	brain
29	chr3:111624200-111628800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:111624200-111629200	Weak transcription	NHDF-Ad	bronchial
31	chr3:111624200-111629400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:111624200-111629400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:111624200-111629600	Weak transcription	Fetal Brain Male	brain
34	chr3:111624600-111628600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:111624600-111629400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:111624600-111632800	Enhancers	Fetal Heart	heart
37	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr3:111624800-111629000	Strong transcription	Placenta	Placenta
39	chr3:111625400-111627600	Genic enhancers	Adipose Nuclei	Adipose
40	chr3:111625400-111628400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:111625600-111628600	Strong transcription	NHEK	skin
42	chr3:111625600-111628600	Strong transcription	Osteobl	bone
43	chr3:111625600-111628800	Weak transcription	HUVEC	blood vessel
44	chr3:111625800-111630200	Weak transcription	Right Atrium	heart
45	chr3:111626000-111629200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:111626200-111627000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:111626200-111627800	Strong transcription	Fetal Stomach	stomach
48	chr3:111626200-111627800	Weak transcription	HSMMtube	muscle
49	chr3:111626200-111628600	Weak transcription	A549	lung
50	chr3:111626200-111629200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links