Variant report

Variant	rs9857092
Chromosome Location	chr3:111614777-111614778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12330320	0.94[EUR][1000 genomes]
rs1282938	0.94[ASN][1000 genomes]
rs1282948	0.80[ASN][1000 genomes]
rs1282956	0.82[ASN][1000 genomes]
rs1282958	0.82[ASN][1000 genomes]
rs1282960	0.88[CHD][hapmap]
rs1282961	0.85[CHD][hapmap]
rs1500046	1.00[JPT][hapmap]
rs1587456	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3749297	0.85[CHD][hapmap]
rs6781879	0.84[JPT][hapmap]
rs6805339	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs6805359	0.84[JPT][hapmap]
rs7642148	0.95[EUR][1000 genomes]
rs968825	0.85[CHD][hapmap]
rs9819082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9840718	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
2	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
3	chr3:111601600-111620400	Weak transcription	Fetal Lung	lung
4	chr3:111601800-111620600	Weak transcription	NHDF-Ad	bronchial
5	chr3:111604000-111632200	Weak transcription	Gastric	stomach
6	chr3:111604200-111617400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:111604200-111617600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:111604400-111614800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:111604400-111617200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:111604400-111617400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:111604400-111618000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:111604400-111618200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:111604400-111620600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:111604400-111621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:111604400-111622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
17	chr3:111604400-111629400	Weak transcription	Ovary	ovary
18	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:111604600-111617400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:111604800-111621600	Weak transcription	NHLF	lung
21	chr3:111604800-111622000	Weak transcription	Adipose Nuclei	Adipose
22	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:111605000-111620400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:111605200-111617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:111606400-111617000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:111606400-111618400	Weak transcription	Placenta	Placenta
28	chr3:111608800-111615200	Weak transcription	Fetal Stomach	stomach
29	chr3:111609200-111615600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:111609200-111618600	Weak transcription	Hela-S3	cervix
31	chr3:111609400-111617400	Weak transcription	HSMM	muscle
32	chr3:111609400-111622400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:111609600-111617200	Weak transcription	Liver	Liver
34	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
35	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:111610200-111617400	Weak transcription	HMEC	breast
38	chr3:111610200-111621600	Weak transcription	Left Ventricle	heart
39	chr3:111610200-111622200	Weak transcription	Lung	lung
40	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
41	chr3:111611000-111615600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:111611000-111617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:111611000-111622000	Weak transcription	Right Ventricle	heart
44	chr3:111611200-111615800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:111611400-111615800	Weak transcription	Osteobl	bone
46	chr3:111611400-111616000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:111612400-111617600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:111612400-111617600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:111612400-111620400	Weak transcription	NH-A	brain
50	chr3:111612600-111615600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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