Variant report

Variant	rs10934125
Chromosome Location	chr3:111640282-111640283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10934123	0.87[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10934124	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11923746	0.83[YRI][hapmap]
rs12487003	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491508	0.83[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs12493023	0.86[EUR][1000 genomes]
rs12493285	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495997	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs12631997	0.85[EUR][1000 genomes]
rs1282944	0.86[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1282948	0.90[ASN][1000 genomes]
rs1282955	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282956	0.88[ASN][1000 genomes]
rs1282957	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282958	0.88[ASN][1000 genomes]
rs1282960	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282961	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13065448	0.81[CEU][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1443077	0.86[EUR][1000 genomes]
rs16858868	0.87[EUR][1000 genomes]
rs16858901	0.92[YRI][hapmap]
rs1709211	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2137898	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175907	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175908	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3749297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145113	0.87[CEU][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4608659	0.85[EUR][1000 genomes]
rs60821969	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62277591	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62277592	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6438021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781879	0.86[YRI][hapmap]
rs6784285	0.94[JPT][hapmap]
rs6785402	0.82[AFR][1000 genomes]
rs6785554	0.80[EUR][1000 genomes]
rs6786655	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6802150	0.86[EUR][1000 genomes]
rs6805359	0.86[YRI][hapmap]
rs7618633	0.83[EUR][1000 genomes]
rs7618841	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs955566	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs968825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111623400-111641200	Weak transcription	Lung	lung
3	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
5	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
7	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
10	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
12	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
14	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:111635800-111641000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:111635800-111641000	Weak transcription	NHDF-Ad	bronchial
23	chr3:111635800-111642800	Strong transcription	Adipose Nuclei	Adipose
24	chr3:111635800-111643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:111636400-111643200	Weak transcription	Psoas Muscle	Psoas
26	chr3:111636600-111640800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:111636600-111641000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:111636600-111641000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:111636600-111641800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:111636600-111642200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:111636800-111641600	Strong transcription	Osteobl	bone
32	chr3:111636800-111642000	Strong transcription	NH-A	brain
33	chr3:111636800-111642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:111637000-111641800	Strong transcription	Left Ventricle	heart
35	chr3:111637000-111642000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:111637200-111641000	Strong transcription	NHEK	skin
37	chr3:111637200-111641800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr3:111637400-111641800	Strong transcription	HSMM	muscle
41	chr3:111637400-111647000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:111637600-111641200	Strong transcription	HMEC	breast
43	chr3:111637800-111641200	Weak transcription	Fetal Lung	lung
44	chr3:111637800-111642800	Weak transcription	Fetal Thymus	thymus
45	chr3:111638000-111640600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:111638000-111642800	Weak transcription	Gastric	stomach
47	chr3:111638400-111640800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:111638400-111641800	Strong transcription	Liver	Liver
49	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr3:111638800-111641200	Weak transcription	Aorta	Aorta

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