Variant report

Variant	rs12495997
Chromosome Location	chr3:111622732-111622733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111576794..111579394-chr3:111620810..111622833,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10934122	0.86[ASN][1000 genomes]
rs10934123	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10934124	0.85[EUR][1000 genomes]
rs10934125	0.85[EUR][1000 genomes]
rs12487003	0.85[EUR][1000 genomes]
rs12491508	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493023	0.97[EUR][1000 genomes]
rs12493285	0.85[EUR][1000 genomes]
rs12631997	0.96[EUR][1000 genomes]
rs1282944	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1282955	0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs1282957	0.84[EUR][1000 genomes]
rs1282960	0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs1282961	0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs13065448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443077	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1587455	0.85[ASN][1000 genomes]
rs16858868	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1709211	0.86[EUR][1000 genomes]
rs2137898	0.85[EUR][1000 genomes]
rs2175907	0.85[EUR][1000 genomes]
rs2175908	0.85[EUR][1000 genomes]
rs3749297	0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs4145113	0.86[CHB][hapmap];0.96[EUR][1000 genomes]
rs4608659	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60821969	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62277591	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62277592	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6438021	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs6775272	0.86[ASN][1000 genomes]
rs6784285	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6785402	0.94[ASN][1000 genomes]
rs6785554	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6786655	0.96[EUR][1000 genomes]
rs6796290	0.86[ASN][1000 genomes]
rs6802150	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7618633	0.93[EUR][1000 genomes]
rs7618841	0.85[EUR][1000 genomes]
rs7621455	0.87[ASN][1000 genomes]
rs7621473	0.85[ASN][1000 genomes]
rs955566	0.85[EUR][1000 genomes]
rs968825	0.90[JPT][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:111604400-111629400	Weak transcription	Ovary	ovary
5	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
9	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
12	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:111617800-111623200	Weak transcription	Liver	Liver
14	chr3:111617800-111623400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:111618400-111623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:111619000-111623600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:111619800-111624000	Enhancers	HUVEC	blood vessel
20	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
21	chr3:111620400-111622800	Genic enhancers	Hela-S3	cervix
22	chr3:111620400-111624000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:111620600-111622800	Enhancers	Osteobl	bone
24	chr3:111620600-111624200	Enhancers	NHDF-Ad	bronchial
25	chr3:111620600-111624400	Enhancers	HMEC	breast
26	chr3:111620600-111626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:111620800-111623600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr3:111620800-111624400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:111621000-111624000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:111621000-111624200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:111621200-111623200	Weak transcription	Fetal Lung	lung
32	chr3:111621200-111626400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:111621600-111623400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:111621600-111623600	Enhancers	HSMM	muscle
35	chr3:111621600-111624000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:111621600-111624000	Enhancers	NHLF	lung
37	chr3:111621600-111624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr3:111621800-111624000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:111622000-111623200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:111622000-111623800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:111622000-111623800	Enhancers	Adipose Nuclei	Adipose
43	chr3:111622000-111624200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:111622000-111625600	Strong transcription	Fetal Stomach	stomach
45	chr3:111622200-111623400	Enhancers	Lung	lung
46	chr3:111622200-111623400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:111622400-111623000	Enhancers	Stomach Smooth Muscle	stomach
48	chr3:111622400-111623200	Weak transcription	Left Ventricle	heart
49	chr3:111622400-111623200	Weak transcription	Psoas Muscle	Psoas
50	chr3:111622400-111623200	Enhancers	NHEK	skin

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