Variant report

Variant	rs1443077
Chromosome Location	chr3:111665919-111665920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111662142..111664055-chr3:111665731..111668558,2	K562	blood:
2	chr3:111664159..111666213-chr3:111682132..111684444,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10934123	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10934124	0.86[EUR][1000 genomes]
rs10934125	0.86[EUR][1000 genomes]
rs12487003	0.86[EUR][1000 genomes]
rs12491508	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12493023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12493285	0.86[EUR][1000 genomes]
rs12495997	0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12631997	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1282944	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1282955	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs1282957	0.85[EUR][1000 genomes]
rs1282960	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1282961	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs13065448	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[EUR][1000 genomes]
rs1553223	0.90[JPT][hapmap]
rs16858868	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1709211	0.85[EUR][1000 genomes]
rs2137898	0.86[EUR][1000 genomes]
rs2175907	0.86[EUR][1000 genomes]
rs2175908	0.86[EUR][1000 genomes]
rs3749297	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs3749298	0.83[JPT][hapmap]
rs4145113	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4608659	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60821969	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62277591	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62277592	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6438021	0.86[EUR][1000 genomes]
rs6784285	0.84[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6785554	0.90[EUR][1000 genomes]
rs6786655	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802150	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs712509	0.88[JPT][hapmap]
rs754914	0.83[JPT][hapmap]
rs7618633	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs7618841	0.86[EUR][1000 genomes]
rs955566	0.86[EUR][1000 genomes]
rs968825	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs9860202	0.85[JPT][hapmap]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:111642200-111674400	Weak transcription	Lung	lung
6	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
7	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:111646400-111671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
10	chr3:111650200-111670000	Strong transcription	Liver	Liver
11	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
14	chr3:111654800-111667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:111656600-111672000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:111656600-111673200	Weak transcription	Stomach Mucosa	stomach
17	chr3:111656600-111674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:111657000-111666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:111657200-111672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:111657400-111673000	Strong transcription	Osteobl	bone
23	chr3:111657800-111674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:111658000-111673000	Strong transcription	Adipose Nuclei	Adipose
25	chr3:111658000-111673200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:111658200-111669800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:111658600-111697400	Weak transcription	Gastric	stomach
28	chr3:111658800-111672600	Weak transcription	Fetal Kidney	kidney
29	chr3:111658800-111685800	Weak transcription	HepG2	liver
30	chr3:111660200-111671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:111660400-111667600	Weak transcription	HSMMtube	muscle
32	chr3:111660400-111671000	Weak transcription	Fetal Heart	heart
33	chr3:111660400-111672400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:111660600-111667400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr3:111660600-111672400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:111660800-111671000	Weak transcription	Fetal Stomach	stomach
37	chr3:111660800-111672000	Weak transcription	Fetal Intestine Large	intestine
38	chr3:111661000-111667800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:111661000-111676000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:111661400-111671800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:111661600-111689800	Weak transcription	Ovary	ovary
42	chr3:111662000-111666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:111662000-111671000	Weak transcription	Pancreas	Pancrea
44	chr3:111662000-111672600	Weak transcription	Aorta	Aorta
45	chr3:111662600-111667200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:111663000-111672200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:111663000-111681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:111663200-111666000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:111663200-111671000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:111663200-111671800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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