Variant report

Variant	rs16858868
Chromosome Location	chr3:111637816-111637817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111636515..111638251-chr3:111642842..111645026,2	MCF-7	breast:
2	chr3:111631571..111633991-chr3:111636308..111638451,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10934122	0.84[ASN][1000 genomes]
rs10934123	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10934124	0.87[EUR][1000 genomes]
rs10934125	0.87[EUR][1000 genomes]
rs12487003	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12491508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12493023	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12493285	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12495997	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12631997	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1282944	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1282955	0.83[CEU][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs1282957	0.86[EUR][1000 genomes]
rs1282960	0.81[CEU][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs1282961	0.81[CEU][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs13065448	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1443077	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1587455	0.83[ASN][1000 genomes]
rs1709211	0.87[EUR][1000 genomes]
rs2137898	0.87[EUR][1000 genomes]
rs2175907	0.87[EUR][1000 genomes]
rs2175908	0.87[EUR][1000 genomes]
rs3749297	0.81[CEU][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4145113	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4608659	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60821969	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62277591	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62277592	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6438021	0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6775272	0.84[ASN][1000 genomes]
rs6784285	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6785402	0.92[ASN][1000 genomes]
rs6785554	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6786655	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6796290	0.84[ASN][1000 genomes]
rs6802150	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7618633	0.87[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7618841	0.87[EUR][1000 genomes]
rs7621455	0.85[ASN][1000 genomes]
rs7621473	0.83[ASN][1000 genomes]
rs955566	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs968825	0.81[CEU][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111623400-111641200	Weak transcription	Lung	lung
3	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
6	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
8	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
11	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:111631000-111639200	Weak transcription	Fetal Brain Male	brain
13	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
16	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:111632400-111639200	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr3:111632800-111639200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:111634600-111640200	Genic enhancers	Hela-S3	cervix
23	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:111635200-111638400	Weak transcription	HepG2	liver
25	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:111635600-111639800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:111635600-111639800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:111635800-111638600	Weak transcription	Right Ventricle	heart
30	chr3:111635800-111641000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:111635800-111641000	Weak transcription	NHDF-Ad	bronchial
32	chr3:111635800-111642800	Strong transcription	Adipose Nuclei	Adipose
33	chr3:111635800-111643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:111636000-111638800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:111636400-111638800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:111636400-111643200	Weak transcription	Psoas Muscle	Psoas
37	chr3:111636600-111640800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:111636600-111641000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:111636600-111641000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:111636600-111641800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:111636600-111642200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:111636800-111641600	Strong transcription	Osteobl	bone
43	chr3:111636800-111642000	Strong transcription	NH-A	brain
44	chr3:111636800-111642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:111637000-111638600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr3:111637000-111639400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr3:111637000-111641800	Strong transcription	Left Ventricle	heart
48	chr3:111637000-111642000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:111637200-111638400	Genic enhancers	Liver	Liver
50	chr3:111637200-111639000	Strong transcription	Fetal Intestine Large	intestine

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