Variant report

Variant	rs6775272
Chromosome Location	chr3:111620226-111620227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10934118	0.81[ASN][1000 genomes]
rs10934122	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10934123	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12487003	0.81[AFR][1000 genomes]
rs12491508	0.85[ASN][1000 genomes]
rs12495997	0.86[ASN][1000 genomes]
rs1282944	0.84[ASN][1000 genomes]
rs13064071	0.81[ASN][1000 genomes]
rs13065448	0.90[ASN][1000 genomes]
rs1500046	0.81[ASN][1000 genomes]
rs1587455	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16858868	0.84[ASN][1000 genomes]
rs4608659	0.89[ASN][1000 genomes]
rs60821969	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs62277591	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62277592	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6438021	0.81[AFR][1000 genomes]
rs6767186	0.81[ASN][1000 genomes]
rs6784285	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6785402	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6785554	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6796290	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6802150	0.89[ASN][1000 genomes]
rs6805339	0.81[ASN][1000 genomes]
rs7621455	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7621473	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs955566	0.81[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6775272	PHLDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
2	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
3	chr3:111601600-111620400	Weak transcription	Fetal Lung	lung
4	chr3:111601800-111620600	Weak transcription	NHDF-Ad	bronchial
5	chr3:111604000-111632200	Weak transcription	Gastric	stomach
6	chr3:111604400-111620600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:111604400-111621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:111604400-111622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
10	chr3:111604400-111629400	Weak transcription	Ovary	ovary
11	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:111604800-111621600	Weak transcription	NHLF	lung
13	chr3:111604800-111622000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:111605000-111620400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:111609400-111622400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
19	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:111610200-111621600	Weak transcription	Left Ventricle	heart
22	chr3:111610200-111622200	Weak transcription	Lung	lung
23	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
24	chr3:111611000-111622000	Weak transcription	Right Ventricle	heart
25	chr3:111612400-111620400	Weak transcription	NH-A	brain
26	chr3:111615600-111622000	Weak transcription	Fetal Stomach	stomach
27	chr3:111617400-111621200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:111617600-111622200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr3:111617800-111623200	Weak transcription	Liver	Liver
31	chr3:111617800-111623400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:111618400-111623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:111618600-111621600	Weak transcription	A549	lung
35	chr3:111618800-111620800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:111618800-111622000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
38	chr3:111619000-111620600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:111619000-111621000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:111619000-111623600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr3:111619200-111620600	Weak transcription	Osteobl	bone
42	chr3:111619400-111620400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:111619400-111620400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:111619400-111620600	Weak transcription	HMEC	breast
45	chr3:111619400-111621600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:111619400-111621600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:111619600-111620800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:111619600-111621600	Weak transcription	HSMM	muscle
49	chr3:111619800-111624000	Enhancers	HUVEC	blood vessel
50	chr3:111620000-111620400	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links