Variant report

Variant	rs62277591
Chromosome Location	chr3:111623526-111623527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111623012..111625590-chr3:111626194..111628474,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10934122	0.88[ASN][1000 genomes]
rs10934123	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10934124	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10934125	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487003	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12491508	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493023	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12493285	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12495997	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12631997	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1282944	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1282955	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1282957	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1282960	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1282961	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13065448	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1443077	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1587455	0.88[ASN][1000 genomes]
rs16858868	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1709211	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2137898	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2175907	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2175908	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3749297	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4145113	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4608659	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60821969	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62277592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6438021	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6775272	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6784285	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785402	0.97[ASN][1000 genomes]
rs6785554	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6786655	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6796290	0.88[ASN][1000 genomes]
rs6802150	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7618633	0.93[EUR][1000 genomes]
rs7618841	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7621455	0.89[ASN][1000 genomes]
rs7621473	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs955566	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs968825	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:111604400-111629400	Weak transcription	Ovary	ovary
5	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
9	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:111618200-111628800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:111618800-111626400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:111619000-111623600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:111619800-111624000	Enhancers	HUVEC	blood vessel
14	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
15	chr3:111620400-111624000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:111620600-111624200	Enhancers	NHDF-Ad	bronchial
17	chr3:111620600-111624400	Enhancers	HMEC	breast
18	chr3:111620600-111626800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:111620800-111623600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr3:111620800-111624400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:111621000-111624000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:111621000-111624200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:111621200-111626400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:111621600-111623600	Enhancers	HSMM	muscle
25	chr3:111621600-111624000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:111621600-111624000	Enhancers	NHLF	lung
27	chr3:111621600-111624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr3:111621800-111624000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:111622000-111623800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:111622000-111623800	Enhancers	Adipose Nuclei	Adipose
32	chr3:111622000-111624200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:111622000-111625600	Strong transcription	Fetal Stomach	stomach
34	chr3:111622400-111624200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr3:111622400-111630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:111622400-111630400	Weak transcription	Pancreas	Pancrea
37	chr3:111622600-111623800	Genic enhancers	Placenta	Placenta
38	chr3:111622600-111624200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr3:111622600-111624200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:111622600-111624200	Genic enhancers	NH-A	brain
41	chr3:111622600-111628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:111622800-111623800	Enhancers	HSMMtube	muscle
43	chr3:111622800-111630200	Weak transcription	Fetal Intestine Small	intestine
44	chr3:111623000-111623600	Enhancers	Right Ventricle	heart
45	chr3:111623000-111624600	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr3:111623200-111623600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:111623200-111623600	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr3:111623200-111623600	Enhancers	Left Ventricle	heart
49	chr3:111623200-111623800	Enhancers	Liver	Liver
50	chr3:111623200-111623800	Enhancers	Fetal Lung	lung

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