Variant report

Variant	rs3749298
Chromosome Location	chr3:111672825-111672826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111672799-111673026	Hela-S3	cervix:	n/a	n/a
2	USF2	chr3:111672425-111672839	Hela-S3	cervix:	n/a	n/a
3	MAZ	chr3:111672781-111672838	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr3:111671455-111673754	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr3:111672613-111672898	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1039308	0.95[ASN][1000 genomes]
rs10934127	0.95[ASN][1000 genomes]
rs11705909	0.95[ASN][1000 genomes]
rs11713177	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs1553223	0.94[JPT][hapmap]
rs4145113	0.83[JPT][hapmap]
rs62277601	0.93[ASN][1000 genomes]
rs6763881	0.95[ASN][1000 genomes]
rs712507	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs712509	0.94[JPT][hapmap]
rs754914	0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9860202	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9876491	0.83[EUR][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:111642200-111674400	Weak transcription	Lung	lung
5	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
6	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
8	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
11	chr3:111656600-111673200	Weak transcription	Stomach Mucosa	stomach
12	chr3:111656600-111674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:111657400-111673000	Strong transcription	Osteobl	bone
16	chr3:111657800-111674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:111658000-111673000	Strong transcription	Adipose Nuclei	Adipose
18	chr3:111658000-111673200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:111658600-111697400	Weak transcription	Gastric	stomach
20	chr3:111658800-111685800	Weak transcription	HepG2	liver
21	chr3:111661000-111676000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:111661600-111689800	Weak transcription	Ovary	ovary
23	chr3:111663000-111681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:111663200-111675200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:111663800-111681200	Strong transcription	NHEK	skin
26	chr3:111664000-111673400	Strong transcription	HMEC	breast
27	chr3:111665800-111675400	Weak transcription	Right Atrium	heart
28	chr3:111666600-111675200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
30	chr3:111667000-111675400	Strong transcription	HSMM	muscle
31	chr3:111667200-111675200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:111670800-111685000	Strong transcription	Liver	Liver
33	chr3:111671000-111673000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:111671000-111673000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:111671000-111673000	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr3:111671000-111673000	Strong transcription	Fetal Stomach	stomach
37	chr3:111671000-111673000	Strong transcription	Pancreas	Pancrea
38	chr3:111671000-111673400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr3:111671000-111673400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr3:111671000-111673800	Strong transcription	Hela-S3	cervix
41	chr3:111671000-111674400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:111671000-111681800	Strong transcription	NH-A	brain
43	chr3:111671200-111673000	Strong transcription	HUVEC	blood vessel
44	chr3:111671200-111680800	Weak transcription	A549	lung
45	chr3:111671400-111673200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:111671400-111673400	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:111671400-111673800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:111671400-111674600	Strong transcription	HSMMtube	muscle
49	chr3:111671400-111675000	Strong transcription	Fetal Muscle Leg	muscle
50	chr3:111671400-111675200	Weak transcription	Brain Inferior Temporal Lobe	brain

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