Variant report

Variant	rs11713177
Chromosome Location	chr3:111647792-111647793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111647137-111648168	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1039308	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10934127	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11705909	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11716038	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13318775	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1553223	0.87[JPT][hapmap]
rs3749298	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs59459551	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62277601	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6763881	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712507	0.95[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs712509	0.85[JPT][hapmap]
rs754914	0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs7645666	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs867680	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs867681	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9819688	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9826337	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9860202	0.84[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs9870405	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
10	chr3:111640000-111648400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:111640000-111651800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:111640200-111651200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:111641800-111650600	Weak transcription	Aorta	Aorta
14	chr3:111641800-111658200	Weak transcription	Ovary	ovary
15	chr3:111642200-111674400	Weak transcription	Lung	lung
16	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
17	chr3:111642800-111653600	Weak transcription	NHDF-Ad	bronchial
18	chr3:111642800-111654400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:111643000-111652800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:111643000-111654600	Weak transcription	Fetal Lung	lung
23	chr3:111643400-111648200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:111643400-111649800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:111643400-111653400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:111643400-111654400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:111643400-111655200	Weak transcription	Stomach Mucosa	stomach
28	chr3:111643400-111656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:111643400-111657800	Weak transcription	Gastric	stomach
30	chr3:111643400-111658200	Weak transcription	HepG2	liver
31	chr3:111643400-111660000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:111643600-111647800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:111643600-111649800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:111643600-111651800	Weak transcription	Small Intestine	intestine
35	chr3:111643600-111654800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:111643600-111658000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:111644000-111648600	Strong transcription	HSMM	muscle
38	chr3:111644000-111650600	Weak transcription	Pancreas	Pancrea
39	chr3:111644200-111648600	Strong transcription	NH-A	brain
40	chr3:111644600-111656200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr3:111644800-111650800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:111644800-111654400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:111645000-111650000	Weak transcription	NHLF	lung
44	chr3:111645000-111650800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:111645000-111652000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:111645000-111658600	Weak transcription	Fetal Heart	heart
47	chr3:111645200-111650200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr3:111645200-111650600	Weak transcription	Right Ventricle	heart
49	chr3:111645200-111663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:111645400-111650600	Weak transcription	Adipose Nuclei	Adipose

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