Variant report

Variant	rs867681
Chromosome Location	chr3:111638846-111638847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1039308	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10934123	0.84[JPT][hapmap]
rs10934127	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11705909	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11713177	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11716038	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491508	0.84[JPT][hapmap]
rs12495997	0.80[JPT][hapmap]
rs1282944	0.84[JPT][hapmap]
rs1282955	0.94[JPT][hapmap]
rs1282960	0.89[JPT][hapmap]
rs1282961	0.89[JPT][hapmap]
rs13065448	0.82[JPT][hapmap]
rs13318775	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749297	0.89[JPT][hapmap]
rs4234407	0.92[ASN][1000 genomes]
rs4234408	0.92[ASN][1000 genomes]
rs4682325	0.93[ASN][1000 genomes]
rs4682326	0.87[GIH][hapmap]
rs59459551	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62277601	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6438021	0.89[JPT][hapmap]
rs6763881	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6781879	0.83[JPT][hapmap]
rs6784285	0.84[JPT][hapmap]
rs6805359	0.83[JPT][hapmap]
rs712507	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs754914	0.86[CHB][hapmap];0.97[GIH][hapmap]
rs7645666	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951661	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs968825	0.89[JPT][hapmap]
rs9819688	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9826337	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870405	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111623400-111641200	Weak transcription	Lung	lung
3	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
6	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
8	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
11	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:111631000-111639200	Weak transcription	Fetal Brain Male	brain
13	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
16	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:111632400-111639200	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr3:111632800-111639200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:111634600-111640200	Genic enhancers	Hela-S3	cervix
23	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:111635600-111639800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:111635600-111639800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:111635800-111641000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:111635800-111641000	Weak transcription	NHDF-Ad	bronchial
30	chr3:111635800-111642800	Strong transcription	Adipose Nuclei	Adipose
31	chr3:111635800-111643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:111636400-111643200	Weak transcription	Psoas Muscle	Psoas
33	chr3:111636600-111640800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:111636600-111641000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:111636600-111641000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:111636600-111641800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:111636600-111642200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:111636800-111641600	Strong transcription	Osteobl	bone
39	chr3:111636800-111642000	Strong transcription	NH-A	brain
40	chr3:111636800-111642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:111637000-111639400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr3:111637000-111641800	Strong transcription	Left Ventricle	heart
43	chr3:111637000-111642000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:111637200-111639000	Strong transcription	Fetal Intestine Large	intestine
45	chr3:111637200-111641000	Strong transcription	NHEK	skin
46	chr3:111637200-111641800	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:111637400-111639000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:111637400-111639200	Strong transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links