Variant report

Variant	rs11705909
Chromosome Location	chr3:111660374-111660375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1039308	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713177	0.95[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11716038	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13318775	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1553223	0.94[JPT][hapmap]
rs3749298	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4145113	0.82[JPT][hapmap]
rs59459551	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62277601	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6763881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs712507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs712509	0.93[JPT][hapmap]
rs754914	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7645666	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs867680	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs867681	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9819688	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9826337	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9860202	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9870405	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
7	chr3:111642200-111674400	Weak transcription	Lung	lung
8	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
9	chr3:111645200-111663600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:111645400-111665400	Weak transcription	Right Atrium	heart
11	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:111646400-111671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
14	chr3:111650200-111670000	Strong transcription	Liver	Liver
15	chr3:111652200-111665600	Weak transcription	Small Intestine	intestine
16	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:111653600-111664000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
20	chr3:111654800-111667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:111655600-111662400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:111656600-111661400	Strong transcription	NHEK	skin
23	chr3:111656600-111672000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:111656600-111673200	Weak transcription	Stomach Mucosa	stomach
25	chr3:111656600-111674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:111657000-111661800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:111657000-111662600	Strong transcription	HMEC	breast
29	chr3:111657000-111662800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:111657000-111665600	Strong transcription	NH-A	brain
31	chr3:111657000-111666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:111657200-111660400	Strong transcription	Hela-S3	cervix
33	chr3:111657200-111665600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:111657200-111672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:111657400-111661800	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr3:111657400-111662000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr3:111657400-111665800	Strong transcription	HSMM	muscle
39	chr3:111657400-111673000	Strong transcription	Osteobl	bone
40	chr3:111657600-111661400	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:111657800-111662000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:111657800-111674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:111658000-111660400	Strong transcription	Colon Smooth Muscle	Colon
44	chr3:111658000-111660400	Strong transcription	HSMMtube	muscle
45	chr3:111658000-111660600	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:111658000-111660600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:111658000-111660600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:111658000-111660800	Strong transcription	Right Ventricle	heart
49	chr3:111658000-111661000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:111658000-111661600	Strong transcription	Stomach Smooth Muscle	stomach

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