Variant report

Variant	rs9819688
Chromosome Location	chr3:111631920-111631921
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111627070..111629244-chr3:111631069..111632880,2	MCF-7	breast:
2	chr3:111631571..111633991-chr3:111636308..111638451,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1039308	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10934123	0.83[JPT][hapmap]
rs10934127	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11705909	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11713177	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11716038	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12491508	0.85[JPT][hapmap]
rs12495997	0.84[JPT][hapmap]
rs1282944	0.83[JPT][hapmap]
rs1282955	0.94[JPT][hapmap]
rs1282960	0.88[JPT][hapmap]
rs1282961	0.88[JPT][hapmap]
rs13318775	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3749297	0.88[JPT][hapmap]
rs4234407	0.90[ASN][1000 genomes]
rs4234408	0.90[ASN][1000 genomes]
rs4516579	0.82[ASN][1000 genomes]
rs4682325	0.91[ASN][1000 genomes]
rs59459551	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62277601	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6438021	0.83[JPT][hapmap]
rs6763881	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6781879	0.87[JPT][hapmap]
rs6784285	0.82[JPT][hapmap]
rs6805359	0.87[JPT][hapmap]
rs712507	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs754914	0.85[CHB][hapmap]
rs7645666	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867680	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs867681	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951661	0.90[ASN][1000 genomes]
rs968825	0.88[JPT][hapmap]
rs9811953	0.82[ASN][1000 genomes]
rs9826337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870405	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
6	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:111623400-111641200	Weak transcription	Lung	lung
8	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:111624600-111632800	Enhancers	Fetal Heart	heart
10	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:111626400-111632200	Weak transcription	HepG2	liver
12	chr3:111626600-111632000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:111627800-111632000	Weak transcription	Fetal Stomach	stomach
14	chr3:111628400-111632200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
16	chr3:111628600-111632000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:111628600-111632200	Enhancers	A549	lung
18	chr3:111629400-111636200	Weak transcription	Psoas Muscle	Psoas
19	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:111629800-111632200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
22	chr3:111630000-111632400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:111630000-111634200	Strong transcription	NHEK	skin
24	chr3:111630200-111637400	Weak transcription	Aorta	Aorta
25	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:111630400-111632200	Weak transcription	Primary B cells from cord blood	blood
27	chr3:111630400-111632200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:111630400-111632200	Weak transcription	HUVEC	blood vessel
29	chr3:111630400-111634800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr3:111630600-111632000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:111630600-111632000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:111630600-111632200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:111630600-111632200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:111630600-111632200	Weak transcription	Ovary	ovary
35	chr3:111630600-111632200	Weak transcription	Right Ventricle	heart
36	chr3:111630600-111634000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:111630600-111634800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:111630600-111634800	Weak transcription	Small Intestine	intestine
39	chr3:111630600-111635600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:111630600-111637000	Weak transcription	Fetal Lung	lung
41	chr3:111630600-111637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
44	chr3:111630800-111632000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:111630800-111632000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:111630800-111632200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:111630800-111632200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:111630800-111632400	Weak transcription	NHDF-Ad	bronchial
49	chr3:111630800-111634200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr3:111630800-111637000	Weak transcription	Primary T cells fromperipheralblood	blood

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