Variant report

Variant	rs4234408
Chromosome Location	chr3:111641393-111641394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10934123	0.84[JPT][hapmap]
rs1154263	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1154264	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11716038	0.87[ASN][1000 genomes]
rs12491508	0.84[JPT][hapmap]
rs12495997	0.80[JPT][hapmap]
rs1282944	0.84[JPT][hapmap]
rs1282955	0.94[JPT][hapmap]
rs1282960	0.89[JPT][hapmap]
rs1282961	0.89[JPT][hapmap]
rs13065448	0.82[JPT][hapmap]
rs13065553	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13091880	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13318775	0.92[ASN][1000 genomes]
rs1553222	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1553223	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1553224	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1553225	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1624911	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1688302	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2015396	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34841747	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3749297	0.89[JPT][hapmap]
rs4234407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59459551	0.86[ASN][1000 genomes]
rs6438021	0.89[JPT][hapmap]
rs6438022	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6781038	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6781879	0.83[JPT][hapmap]
rs6784285	0.84[JPT][hapmap]
rs6805359	0.83[JPT][hapmap]
rs712507	0.80[CHB][hapmap]
rs712509	0.88[CEU][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs754914	0.80[CHB][hapmap]
rs7645666	0.90[ASN][1000 genomes]
rs867680	0.92[ASN][1000 genomes]
rs867681	0.92[ASN][1000 genomes]
rs951661	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968825	0.89[JPT][hapmap]
rs9819688	0.90[ASN][1000 genomes]
rs9826337	0.90[ASN][1000 genomes]
rs9870405	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4234408	ZDHHC23	cis	cerebellum	SCAN

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
4	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
6	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
9	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
11	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
13	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:111635800-111642800	Strong transcription	Adipose Nuclei	Adipose
21	chr3:111635800-111643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:111636400-111643200	Weak transcription	Psoas Muscle	Psoas
23	chr3:111636600-111641800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:111636600-111642200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:111636800-111641600	Strong transcription	Osteobl	bone
26	chr3:111636800-111642000	Strong transcription	NH-A	brain
27	chr3:111636800-111642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:111637000-111641800	Strong transcription	Left Ventricle	heart
29	chr3:111637000-111642000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:111637200-111641800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:111637400-111641800	Strong transcription	HSMM	muscle
34	chr3:111637400-111647000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:111637800-111642800	Weak transcription	Fetal Thymus	thymus
36	chr3:111638000-111642800	Weak transcription	Gastric	stomach
37	chr3:111638400-111641800	Strong transcription	Liver	Liver
38	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr3:111638800-111643200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:111638800-111643200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:111639000-111642000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:111639400-111642600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:111639400-111643200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr3:111639600-111641400	Weak transcription	Fetal Kidney	kidney
46	chr3:111639600-111642000	Strong transcription	Fetal Heart	heart
47	chr3:111639600-111642200	Weak transcription	HSMMtube	muscle
48	chr3:111639800-111641600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
50	chr3:111640000-111642200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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