Variant report

Variant	rs2015396
Chromosome Location	chr3:111643797-111643798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111636515..111638251-chr3:111642842..111645026,2	MCF-7	breast:
2	chr3:111633731..111635753-chr3:111641822..111644588,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1154263	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1154264	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13065553	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13091880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553222	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1553223	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1553224	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1553225	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1624911	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1688302	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34841747	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4234407	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4234408	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4682325	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6438022	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6781038	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs712509	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951661	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
5	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:111634400-111644800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:111635000-111649000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:111635600-111655200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:111637200-111646400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:111637400-111647000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:111638600-111659200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:111639800-111661000	Weak transcription	Primary B cells from cord blood	blood
16	chr3:111640000-111648400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:111640000-111651800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:111640200-111651200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:111640400-111645000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:111640800-111645000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:111641000-111645400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:111641000-111645400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:111641000-111645400	Strong transcription	Fetal Intestine Large	intestine
24	chr3:111641000-111645400	Genic enhancers	NHEK	skin
25	chr3:111641200-111645400	Strong transcription	Fetal Stomach	stomach
26	chr3:111641200-111646000	Genic enhancers	A549	lung
27	chr3:111641200-111646200	Genic enhancers	Hela-S3	cervix
28	chr3:111641800-111644000	Weak transcription	Fetal Kidney	kidney
29	chr3:111641800-111650600	Weak transcription	Aorta	Aorta
30	chr3:111641800-111658200	Weak transcription	Ovary	ovary
31	chr3:111642000-111645400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr3:111642200-111643800	Enhancers	HSMMtube	muscle
33	chr3:111642200-111674400	Weak transcription	Lung	lung
34	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
35	chr3:111642400-111643800	Enhancers	Colon Smooth Muscle	Colon
36	chr3:111642600-111643800	Enhancers	HUVEC	blood vessel
37	chr3:111642600-111644000	Weak transcription	NHLF	lung
38	chr3:111642600-111647200	Strong transcription	Osteobl	bone
39	chr3:111642800-111644000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:111642800-111644000	Enhancers	Pancreas	Pancrea
41	chr3:111642800-111653600	Weak transcription	NHDF-Ad	bronchial
42	chr3:111642800-111654400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:111643000-111643800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:111643000-111643800	Enhancers	Left Ventricle	heart
45	chr3:111643000-111644800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:111643000-111645200	Enhancers	Right Ventricle	heart
47	chr3:111643000-111645400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:111643000-111645800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:111643000-111652800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:111643000-111654400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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